Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004826`

染色体: Chr08 坐标: 57518592-57523077 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004826`
名称	SmilChr08G004826
描述	chloroplast envelope quinone oxidoreductase homolog
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	57518592 - 57523077 / `+`

ID 对照

NCBI Gene ID	`LOC130999488`
GeneID	`130999488`
locus_tag	`-`
NCBI Name	`LOC130999488`
原始查询	`LOC130999488`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	chloroplast envelope quinone oxidoreductase homolog
产物	chloroplast envelope quinone oxidoreductase homolog
Arabidopsis	`AT4G13010` (AT4G13010) Oxidoreductase, zinc-binding dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:826914] identity=72.3; qcov=1; evalue=1.81e-169; confidence=high
Rice	`Os09g0503100` - identity=59.3; qcov=1.02; evalue=6.8e-135; confidence=high
GO	GO:0016491 (oxidoreductase activity)
KEGG	smil00592 (alpha-Linolenic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00107 (ADH_zinc_N); PF08240 (ADH_N); PF13602 (ADH_zinc_N_2)
InterPro	-
eggNOG	-
NR	GeneID:130999488

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast membrane	叶绿体膜	0.60000	`XP_057781010.1`
2	Chloroplast	叶绿体	0.60000	`XP_057781011.1`
3	Mitochondrion	线粒体	0.20000	`XP_057781010.1`
4	Nucleus	细胞核	0.00000	`XP_057781010.1`
5	Chromosome	染色体	0.00000	`XP_057781010.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:57519580`	`C`	`T`	EMS_canonical_SNV	stop_gained	75	A14,A16,A18,A23,A25,A3,A4,A7,A8,A9,B10,B100,B102,B104,B110,B113,B122,B127,B128,B130,B131,B135,B138,B16,B18,B26,B29,B30,B31,B33,B34,B37,B38,B39,B40,B44,B48,B5,B53,B55,B67,B69,B72,B74,B78,B79,B82,B83,B9,C12,C13,C14,C20,C22,C24,C28,C38,C40,C41,C44,C48,C49,C52,C53,C54,C60,C71,C72,C75,C78,C79,C85,D2,D3,D9
`Chr8:57519645`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B118,C14
`Chr8:57519697`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B133
`Chr8:57522133`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D10,D11
`Chr8:57522158`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A23,B15,C18,C7
`Chr8:57522170`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B10
`Chr8:57522258`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B10
`Chr8:57522260`	`C`	`T`	EMS_canonical_SNV	stop_gained	19	A14,B109,B21,B23,B47,B52,B59,B60,B65,B66,B67,B73,B87,B98,C16,C21,C23,C37,C56
`Chr8:57522371`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B36
`Chr8:57522549`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B12,C85
`Chr8:57522573`	`TCG`	`T`	2bp_deletion	frameshift_variant	3	B95,C47,C86
`Chr8:57522573`	`TCG`	`T`	2bp_deletion	CDS_variant	3	B95,C47,C86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781010.1

354 aa

177

354

ADH_N

ADH_zinc_N

ADH_zinc_N_2

PF08240 ADH_N 59-145 aa PF00107 ADH_zinc_N 192-256 aa PF13602 ADH_zinc_N_2 223-352 aa

XP_057781011.1

328 aa

164

328

ADH_N

ADH_zinc_N

ADH_zinc_N_2

PF08240 ADH_N 33-119 aa PF00107 ADH_zinc_N 166-230 aa PF13602 ADH_zinc_N_2 197-326 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781010.1`	Pfam	`PF08240`	ADH_N	Domain	59	145	2.3e-17	63.9	Alcohol dehydrogenase GroES-like domain
`XP_057781010.1`	Pfam	`PF00107`	ADH_zinc_N	Domain	192	256	2.9e-11	44.1	Zinc-binding dehydrogenase
`XP_057781010.1`	Pfam	`PF13602`	ADH_zinc_N_2	Domain	223	352	1.2e-22	81.9	Zinc-binding dehydrogenase
`XP_057781011.1`	Pfam	`PF08240`	ADH_N	Domain	33	119	1.9e-17	64.1	Alcohol dehydrogenase GroES-like domain
`XP_057781011.1`	Pfam	`PF00107`	ADH_zinc_N	Domain	166	230	2.6e-11	44.3	Zinc-binding dehydrogenase
`XP_057781011.1`	Pfam	`PF13602`	ADH_zinc_N_2	Domain	197	326	1e-22	82.2	Zinc-binding dehydrogenase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057925028.1
ATGTTTCATGGACTATTAAAAAAACTGAATCAAACGTCGAAACCAAATCAAAATTCTTTGATTCATTTGTATCCTTTCTGTAGCTTAGCTGTCTACGTCTGGGTAAGCGGCGGAAGCTCTCTGCCCTTAGCGCCACTCTATGTCCATACCTCACCATACTGATATATACATATATAAATATATATGCACGCACATCTAGGTGAAGGGTGAAAACTAAGATTTGATAATTTCGAAGAAATTTCTTCTATCAATTTCTCCTT...

XM_057925027.1
AAATTCTTTGATTCATTTGTATCCTTTCTGTAGCTTAGCTGTCTACGTCTGGGTAAGCGGCGGAAGCTCTCTGCCCTTAGCGCCACTCTATGTCCATACCTCACCATACTGATATATACATATATAAATATATATGCACGCACATCTAGGTGAAGGGTGAAAACTAAGATTTGATAATTTCGAAGAAATTTCTTCTATCAATTTCTCCTTTTCGATCGTAGTCTCTGCAAGTAAATCGTCTCGGTGTAATAGCTATGGCG...

CDS

2 records

下载 CDS FASTA

LOC130999488
ATGGCGGGGAAGCTCATGCGCGCGGTTCAGTACGACAGTTATGGCGGCGGAGCTGCTGCTTTGAAGCAAGTTGAACTTCCAGTTCCTACTCCAAGTAAGGGTGAAGTCCTGCTGAAGCTGGAAGCTACAACCTTAAATCCTGTTGATTGGAAAGTTCAGAAAGGCTTTCTTCGTCCTTTTATTCCCAAGAAATTTCCTTATATTCCTGGTACCGATGTAGCTGGAGAAGTTGTGGAGGTCGGCCCCGGAGTAGAAAACTT...

LOC130999488
ATGGCGGCGGATCGAAGTGTGTGTGAGCCGCTGCGGGTGGGTGGTGGATATCCCACATCTAAAACGTGTGAGCTGCCGTGGGCAATGGATCGGAAGCGTGGTAGTTTGGATATCAGCTGTTGCAAGCGACGGATTGGAAGCGTGCAAGTTGAACTTCCAGTTCCTACTCCAAGTAAGGGTGAAGTCCTGCTGAAGCTGGAAGCTACAACCTTAAATCCTGTTGATTGGAAAGTTCAGAAAGGCTTTCTTCGTCCTTTTAT...

Protein

2 records

下载 Protein FASTA

XP_057781010.1
MAADRSVCEPLRVGGGYPTSKTCELPWAMDRKRGSLDISCCKRRIGSVQVELPVPTPSKGEVLLKLEATTLNPVDWKVQKGFLRPFIPKKFPYIPGTDVAGEVVEVGPGVENFKPGDKVIGAFSHGTGGGLAEYAVAKIDVTFPRPPEVSAADGASFPIAGCTAHGALTSAGLKFDGSGPQKNILVTAASGGVGHFAVQLAKLGNAHVTATCGARNIDLVRSLGADEVLDYKTPEGAALKSPSGKKYDAVIQCASSIPWS...

XP_057781011.1
MAGKLMRAVQYDSYGGGAAALKQVELPVPTPSKGEVLLKLEATTLNPVDWKVQKGFLRPFIPKKFPYIPGTDVAGEVVEVGPGVENFKPGDKVIGAFSHGTGGGLAEYAVAKIDVTFPRPPEVSAADGASFPIAGCTAHGALTSAGLKFDGSGPQKNILVTAASGGVGHFAVQLAKLGNAHVTATCGARNIDLVRSLGADEVLDYKTPEGAALKSPSGKKYDAVIQCASSIPWSVFEPNLSPSGKVIELTPGVSHMWTFA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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