当前解析结果
SmilChr08G004837| 统一新 Gene ID | SmilChr08G004837 |
|---|---|
| 名称 | SmilChr08G004837 |
| 描述 | uncharacterized SmilChr08G004837 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 57621002 - 57621820 / + |
| NCBI Gene ID | LOC130999494 |
|---|---|
| GeneID | 130999494 |
| locus_tag | - |
| NCBI Name | LOC130999494 |
| 原始查询 | LOC130999494 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0704400; species=rice; confidence=low |
| 产物 | hit=Os06g0704400; species=rice; confidence=low |
| Arabidopsis | AT3G05850 (MUG7)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859] identity=26.6; qcov=0.646; evalue=5.29e-08; confidence=low |
| Rice | Os06g0704400- identity=38.8; qcov=0.586; evalue=4.29e-16; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999494 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057781017.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057781017.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057781017.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057781017.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057781017.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:57621062 |
GA |
G |
1bp_deletion | frameshift_variant | 83 | A11,A20,A21,A25,A3,A4,A5,A9,B101,B108,B110,B111,B112,B114,B119,B120,B123,B124,B13,B131,B135,B136,B139,B14,B19,B2,B22,B23,B24,B26,B29,B40,B47,B50,B52,B53,B60,B62,B68,B70,B71,B8,B80,B87,B89,B9,B98,C1,C16,C17,C20,C21,C22,C24,C26,C27,C3,C31,C42,C43,C44,C46,C47,C48,C5,C55,C58,C6,C60,C62,C64,C66,C74,C77,C78,C85,D1,D10,D11,D3,D4,D7,D8 |
Chr8:57621141 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr8:57621152 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B6,C42 |
Chr8:57621172 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A4,B81 |
Chr8:57621191 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A4,B81,C85 |
Chr8:57621209 |
AG |
A |
1bp_deletion | frameshift_variant | 6 | B114,B135,C21,C24,C47,D7 |
Chr8:57621229 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B30,B81,C6 |
Chr8:57621230 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
Chr8:57621240 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr8:57621348 |
C |
T |
EMS_canonical_SNV | stop_gained | 3 | A4,B81,C85 |
Chr8:57621348 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A4,B81,C85 |
Chr8:57621442 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B65,B89,C78 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。