当前解析结果
SmilChr08G004843| 统一新 Gene ID | SmilChr08G004843 |
|---|---|
| 名称 | SmilChr08G004843 |
| 描述 | nicotine N-demethylase CYP82E3-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 57691150 - 57694047 / + |
| NCBI Gene ID | LOC130999504 |
|---|---|
| GeneID | 130999504 |
| locus_tag | - |
| NCBI Name | LOC130999504 |
| 原始查询 | LOC130999504 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | nicotine N-demethylase CYP82E3-like |
| 产物 | nicotine N-demethylase CYP82E3-like |
| Arabidopsis | AT4G31940 (CYP82C4)cytochrome P450, family 82, subfamily C, polypeptide 4 [Source:NCBI gene (formerly Entrezgene);Acc:829324] identity=50.5; qcov=0.925; evalue=4.68e-164; confidence=high |
| Rice | Os09g0441700- identity=35.2; qcov=0.983; evalue=8.43e-105; confidence=medium |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999504 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057781026.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057781026.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057781026.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781026.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781026.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:57691404 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B140,B45,B63,D4 |
Chr8:57691429 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B43 |
Chr8:57691429 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B43 |
Chr8:57691444 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B122,B2,B7 |
Chr8:57691549 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr8:57691565 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B56,C14,D11 |
Chr8:57691612 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr8:57691615 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B120,C65 |
Chr8:57691733 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B108,B119,B46 |
Chr8:57691829 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C9 |
Chr8:57691910 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr8:57691996 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B96 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057781026.1PF00067
p450 42-512 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781026.1 |
Pfam | PF00067 |
p450 | Domain | 42 | 512 | 2.4e-90 | 304.3 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。