当前解析结果
SmilChr08G004850| 统一新 Gene ID | SmilChr08G004850 |
|---|---|
| 名称 | SmilChr08G004850 |
| 描述 | uncharacterized SmilChr08G004850 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 57721674 - 57723930 / + |
| NCBI Gene ID | LOC130999511 |
|---|---|
| GeneID | 130999511 |
| locus_tag | - |
| NCBI Name | LOC130999511 |
| 原始查询 | LOC130999511 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [Source:NCBI gene (formerly Entrezgene);Acc:822103]; symbol=AT3G25120; hit=AT3G25120; species=arabidopsis; confidence=high |
| 产物 | Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [Source:NCBI gene (formerly Entrezgene);Acc:822103]; symbol=AT3G25120; hit=AT3G25120; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G25120 (AT3G25120)Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [Source:NCBI gene (formerly Entrezgene);Acc:822103] identity=51.6; qcov=0.959; evalue=7.91e-60; confidence=high |
| Rice | Os04g0376100- identity=51.5; qcov=0.892; evalue=3.87e-51; confidence=high |
| GO | GO:0008320 (transmembrane protein transporter activity); GO:0030943 (mitochondrion targeting sequence binding); GO:0042721 (TIM22 mitochondrial import inner membrane insertion complex); GO:0045039 (protein insertion into mitochondrial inner membrane) |
| KEGG | - |
| Pfam | PF02466 (Tim17) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999511 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057781034.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 0.40000 | XP_057781034.1 |
| 3 | Chloroplast membrane | 叶绿体膜 | 0.40000 | XP_057781034.1 |
| 4 | Chloroplast | 叶绿体 | 0.20000 | XP_057781034.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057781034.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:57721833 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | C17 |
Chr8:57721833 |
TG |
T |
1bp_deletion | CDS_variant | 1 | C17 |
Chr8:57721913 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B56,B96,C14,D7 |
Chr8:57721930 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B56,B96,C14,D7 |
Chr8:57722098 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B108,B140,B61 |
Chr8:57722162 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:57723202 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B32,B90,D1 |
Chr8:57723220 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B34,B35,C11,C6,C69 |
Chr8:57723241 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr8:57723503 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A14,B103,B30,B78 |
Chr8:57723655 |
GAT |
G |
2bp_deletion | CDS_variant | 2 | B104,B35 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057781034.1PF02466
Tim17 60-131 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781034.1 |
Pfam | PF02466 |
Tim17 | Family | 60 | 131 | 1.1e-08 | 36.0 | Tim17/Tim22/Tim23/Pmp24 family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。