Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004856`

染色体: Chr08 坐标: 57757793-57762619 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004856`
名称	SmilChr08G004856
描述	uncharacterized SmilChr08G004856
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	57757793 - 57762619 / `+`

ID 对照

NCBI Gene ID	`LOC130999517`
GeneID	`130999517`
locus_tag	`-`
NCBI Name	`LOC130999517`
原始查询	`LOC130999517`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	GPI transamidase component PIG-S-like protein [Source:NCBI gene (formerly Entrezgene);Acc:819905]; symbol=AT3G07180; hit=AT3G07180; species=arabidopsis; confidence=high
产物	GPI transamidase component PIG-S-like protein [Source:NCBI gene (formerly Entrezgene);Acc:819905]; symbol=AT3G07180; hit=AT3G07180; species=arabidopsis; confidence=high
Arabidopsis	`AT3G07180` (AT3G07180) GPI transamidase component PIG-S-like protein [Source:NCBI gene (formerly Entrezgene);Acc:819905] identity=58.4; qcov=0.942; evalue=0; confidence=high
Rice	`Os01g0907300` (B1417F08.19-2) - identity=51.4; qcov=0.968; evalue=1.41e-176; confidence=high
GO	GO:0016255 (attachment of GPI anchor to protein); GO:0042765 (GPI-anchor transamidase complex)
KEGG	smil00563 (Glycosylphosphatidylinositol (GPI)-anchor biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF10510 (PIG-S)
InterPro	-
eggNOG	-
NR	GeneID:130999517

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057781038.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057781038.1`
3	Nucleus	细胞核	0.00000	`XP_057781038.1`
4	Chromosome	染色体	0.00000	`XP_057781038.1`
5	Centromere	着丝粒	0.00000	`XP_057781038.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:57757992`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A3,C11,C28
`Chr8:57758043`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B86,C57
`Chr8:57758257`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B112
`Chr8:57758351`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C11,C18
`Chr8:57758520`	`G`	`GTA`	2bp_insertion	frameshift_variant	28	A11,B100,B103,B124,B13,B134,B34,B46,B51,B55,B60,B61,B65,B67,B78,B85,B9,C17,C22,C35,C40,C43,C44,C49,C55,C9,D2,D3
`Chr8:57758575`	`T`	`TTA`	2bp_insertion	frameshift_variant	6	B3,B41,B51,B66,B9,C63
`Chr8:57758577`	`GGT`	`G`	2bp_deletion	frameshift_variant	6	B3,B41,B51,B66,B9,C63
`Chr8:57758580`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A16,B8,C9
`Chr8:57758803`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr8:57758822`	`AG`	`A`	1bp_deletion	frameshift_variant	3	B10,B104,C34
`Chr8:57758822`	`AG`	`A`	1bp_deletion	CDS_variant	3	B10,B104,C34
`Chr8:57758825`	`TCG`	`T`	2bp_deletion	frameshift_variant	3	B10,B104,C34

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781038.1

612 aa

306

612

PIG-S

PF10510 PIG-S 49-599 aa

XP_057781039.1

531 aa

266

531

PIG-S

PF10510 PIG-S 49-519 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781038.1`	Pfam	`PF10510`	PIG-S	Family	49	599	2.4e-132	443.2	Phosphatidylinositol-glycan biosynthesis class S protein
`XP_057781039.1`	Pfam	`PF10510`	PIG-S	Family	49	519	7.1e-99	332.8	Phosphatidylinositol-glycan biosynthesis class S protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057925055.1
TAGTTTATTTTAATTATAATATAAAATATAAATATTTAATCACTACTGATTTGAAATTCTTAGCTTCAATCTAAATAACCGAAGAAAATGAGCGCTTTTCTCAGCTGCGAATAGCTCGAGTAGAACGAAAATGGCCGCCACCAGCGCTCCAACTCCGCCGCCGACGGCTGAAATCGCCGAAGCTCCGCCGTCCTCCGCCCCCAAGCTCGAAAATCCAGAACCAGATTGTCCCCGCAAAACCAAGCCAGGACTGAAACGCC...

XM_057925056.1
TTGAAATTCTTAGCTTCAATCTAAATAACCGAAGAAAATGAGCGCTTTTCTCAGCTGCGAATAGCTCGAGTAGAACGAAAATGGCCGCCACCAGCGCTCCAACTCCGCCGCCGACGGCTGAAATCGCCGAAGCTCCGCCGTCCTCCGCCCCCAAGCTCGAAAATCCAGAACCAGATTGTCCCCGCAAAACCAAGCCAGGACTGAAACGCCTCGCTCTCACCCTCACTGTTCTCTTCTCTTTCCTGTTAGGTCTTCCATTT...

CDS

2 records

下载 CDS FASTA

LOC130999517
ATGGCCGCCACCAGCGCTCCAACTCCGCCGCCGACGGCTGAAATCGCCGAAGCTCCGCCGTCCTCCGCCCCCAAGCTCGAAAATCCAGAACCAGATTGTCCCCGCAAAACCAAGCCAGGACTGAAACGCCTCGCTCTCACCCTCACTGTTCTCTTCTCTTTCCTGTTAGGTCTTCCATTTTTGTTAACATCAGTAGAAATCTATAGATCGCCGCTGCCGTTCCGAGAAATTGATGATTTGTCCGCCGCGGTTGAGTCGAA...

Protein

2 records

下载 Protein FASTA

XP_057781038.1
MAATSAPTPPPTAEIAEAPPSSAPKLENPEPDCPRKTKPGLKRLALTLTVLFSFLLGLPFLLTSVEIYRSPLPFREIDDLSAAVESNPLQFPCKFRAVFVGTGGSSFNANELSVKIEHQMRKVAAKDSTSCGACSYNSSVSVVVENGADCFRSDNDFSWKCGALSELNKYEHSRENNDELFDEYLHSLVDETSSRSNGGKVYTVIVVRREGQKDVSAVVGKYRHGWIVGRVSEEEAVKKVAEVFVKAFVNGGKEEGSISG...

XP_057781039.1
MAATSAPTPPPTAEIAEAPPSSAPKLENPEPDCPRKTKPGLKRLALTLTVLFSFLLGLPFLLTSVEIYRSPLPFREIDDLSAAVESNPLQFPCKFRAVFVGTGGSSFNANELSVKIEHQMRKVAAKDSTSCGACSYNSSVSVVVENGADCFRSDNDFSWKCGALSELNKYEHSRENNDELFDEYLHSLVDETSSRSNGGKVYTVIVVRREGQKDVSAVVGKYRHGWIVGRVSEEEAVKKVAEVFVKAFVNGGKEEGSISG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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