Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004858`

染色体: Chr08 坐标: 57764777-57767210 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004858`
名称	SmilChr08G004858
描述	xyloglucan endotransglucosylase/hydrolase protein 3-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	57764777 - 57767210 / `-`

ID 对照

NCBI Gene ID	`LOC130999518`
GeneID	`130999518`
locus_tag	`-`
NCBI Name	`LOC130999518`
原始查询	`LOC130999518`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	xyloglucan endotransglucosylase/hydrolase protein 3-like
产物	xyloglucan endotransglucosylase/hydrolase protein 3-like
Arabidopsis	`AT4G13090` (XTH2) xyloglucan endotransglucosylase/hydrolase 2 [Source:NCBI gene (formerly Entrezgene);Acc:826923] identity=52.3; qcov=1.02; evalue=4.67e-104; confidence=high
Rice	`Os11g0539200` (OsXTH2) - identity=46.2; qcov=0.953; evalue=1.02e-81; confidence=high
GO	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0005618 (cell wall); GO:0010411 (xyloglucan metabolic process); GO:0016762 (xyloglucan:xyloglucosyl transferase activity); GO:0042546 (cell wall biogenesis); GO:0048046 (apoplast)
KEGG	-
Pfam	PF00722 (Glyco_hydro_16); PF06955 (XET_C)
InterPro	-
eggNOG	-
NR	GeneID:130999518

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	1.00000	`XP_057781041.1`
2	Cell wall	细胞壁	0.40000	`XP_057781040.1`
3	Golgi apparatus	高尔基体	0.20000	`XP_057781041.1`
4	Nucleus	细胞核	0.00000	`XP_057781041.1`
5	Chromosome	染色体	0.00000	`XP_057781041.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:57764831`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A15,B127,B2,C49
`Chr8:57765142`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B50,B61
`Chr8:57765169`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B123,C8,D7
`Chr8:57765184`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr8:57765987`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B90,D1
`Chr8:57766504`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B98

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781040.1

288 aa

144

288

Glyco_hydro_16

XET_C

PF00722 Glyco_hydro_16 30-207 aa PF06955 XET_C 238-284 aa

XP_057781041.1

279 aa

140

279

Glyco_hydro_16

XET_C

PF00722 Glyco_hydro_16 30-198 aa PF06955 XET_C 229-275 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781040.1`	Pfam	`PF00722`	Glyco_hydro_16	Domain	30	207	1e-63	214.7	Glycosyl hydrolases family 16
`XP_057781040.1`	Pfam	`PF06955`	XET_C	Family	238	284	1.8e-14	54.0	Xyloglucan endo-transglycosylase (XET) C-terminus
`XP_057781041.1`	Pfam	`PF00722`	Glyco_hydro_16	Domain	30	198	9.6e-53	178.9	Glycosyl hydrolases family 16
`XP_057781041.1`	Pfam	`PF06955`	XET_C	Family	229	275	1.7e-14	54.1	Xyloglucan endo-transglycosylase (XET) C-terminus

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057925058.1
TGAAATTTGATATAGAATTAGGGTTTCTCTTTCTCATGCATTTTCACAAAGATGGGTTCTTGTAAGTTCACTTTTCTTGCACTTCTCTACGTCTTCGGATCGACGGTGGATGCCGCATTCCGCGATGTACCGTTCGATGATATTTACGACGTCGTTTGGGGTGGCGACCATGTTATGTTCCTCAATGAACGCAGAGATGCTCAGCTTTGGATGGATCCCAATTCCGGTGCTGGATTTGGATCAAAGCTAAATTATGGATC...

XM_057925057.1
AAATTTGATATAGAATTAGGGTTTCTCTTTCTCATGCATTTTCACAAAGATGGGTTCTTGTAAGTTCACTTTTCTTGCACTTCTCTACGTCTTCGGATCGACGGTGGATGCCGCATTCCGCGATGTACCGTTCGATGATATTTACGACGTCGTTTGGGGTGGCGACCATGTTATGTTCCTCAATGAACGCAGAGATGCTCAGCTTTGGATGGATCCCAATTCCGGTGCTGGATTTGGATCAAAGCTAAATTATGGATCAG...

CDS

2 records

下载 CDS FASTA

LOC130999518
ATGGGTTCTTGTAAGTTCACTTTTCTTGCACTTCTCTACGTCTTCGGATCGACGGTGGATGCCGCATTCCGCGATGTACCGTTCGATGATATTTACGACGTCGTTTGGGGTGGCGACCATGTTATGTTCCTCAATGAACGCAGAGATGCTCAGCTTTGGATGGATCCCAATTCCGGTGCTGGATTTGGATCAAAGCTAAATTATGGATCAGGATTCTTTCACATGAGAATCAAGCTTCCCAATAAGGACTCTGCAGGAGT...

Protein

2 records

下载 Protein FASTA

XP_057781040.1
MGSCKFTFLALLYVFGSTVDAAFRDVPFDDIYDVVWGGDHVMFLNERRDAQLWMDPNSGAGFGSKLNYGSGFFHMRIKLPNKDSAGVVTAFYLTSNSSKHDEIDFEFLGNREGKPITLQTNVFAEGMGDREQRTLLWFDPTADFHTYKLLWNLHQIVFYVDNIPIRVFRNKQDIGVPYPNQPMRIQVSLWNGEDWATDGGKTKIDWSHAPFVAHFQGFGFGACPVPKNTIDVEGCYDSKYWWNGSKYWKLSGKEQRLFEE...

XP_057781041.1
MGSCKFTFLALLYVFGSTVDAAFRDVPFDDIYDVVWGGDHVMFLNERRDAQLWMDPNSGAGFGSKLNYGSGFFHMRIKLPNKDSAGVVTAFYLTSNSSKHDEIDFEFLGNREGKPITLQTNVFAEGMGDREQRTLLWFDPTADFHTYKLLWNLHQIVVFRNKQDIGVPYPNQPMRIQVSLWNGEDWATDGGKTKIDWSHAPFVAHFQGFGFGACPVPKNTIDVEGCYDSKYWWNGSKYWKLSGKEQRLFEEVRDKYMNYD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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