当前解析结果
SmilChr08G004860| 统一新 Gene ID | SmilChr08G004860 |
|---|---|
| 名称 | SmilChr08G004860 |
| 描述 | chromatin modification-related protein EAF1 B-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 57772879 - 57785816 / + |
| NCBI Gene ID | LOC130999519 |
|---|---|
| GeneID | 130999519 |
| locus_tag | - |
| NCBI Name | LOC130999519 |
| 原始查询 | LOC130999519 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | chromatin modification-related protein EAF1 B-like |
| 产物 | chromatin modification-related protein EAF1 B-like |
| Arabidopsis | AT3G24880 (AT3G24880)Helicase/SANT-associated, DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:822086] identity=45.9; qcov=1.03; evalue=0; confidence=high |
| Rice | Os08g0177300- identity=45.2; qcov=0.49; evalue=1.68e-165; confidence=medium |
| GO | GO:0035267 (NuA4 histone acetyltransferase complex) |
| KEGG | - |
| Pfam | PF07529 (HSA); PF13921 (Myb_DNA-bind_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999519 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057781044.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057781044.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057781044.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057781044.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057781044.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:57775241 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B69,D10 |
Chr8:57775333 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr8:57776469 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B42,B84 |
Chr8:57776715 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C76,D8 |
Chr8:57777926 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B18,B30,B39,C74,C84 |
Chr8:57778247 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr8:57782668 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A4 |
Chr8:57783227 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C20 |
Chr8:57783227 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C20 |
Chr8:57783580 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A9,C85 |
Chr8:57783604 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A9 |
Chr8:57783605 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A4,B108,B140,B61 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781044.1PF07529
HSA 602-636 aa
PF13921
Myb_DNA-bind_6 1071-1124 aa
XP_057781045.1PF07529
HSA 602-636 aa
PF13921
Myb_DNA-bind_6 1071-1124 aa
XP_057781046.1PF07529
HSA 602-636 aa
PF13921
Myb_DNA-bind_6 1071-1124 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781044.1 |
Pfam | PF07529 |
HSA | Family | 602 | 636 | 1.4e-09 | 38.8 | HSA domain |
XP_057781044.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 1071 | 1124 | 8.8e-06 | 26.5 | Myb-like DNA-binding domain |
XP_057781045.1 |
Pfam | PF07529 |
HSA | Family | 602 | 636 | 1.4e-09 | 38.8 | HSA domain |
XP_057781045.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 1071 | 1124 | 7.9e-06 | 26.7 | Myb-like DNA-binding domain |
XP_057781046.1 |
Pfam | PF07529 |
HSA | Family | 602 | 636 | 2e-10 | 41.5 | HSA domain |
XP_057781046.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 1071 | 1124 | 8.5e-06 | 26.6 | Myb-like DNA-binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。