当前解析结果
SmilChr08G004902| 统一新 Gene ID | SmilChr08G004902 |
|---|---|
| 名称 | SmilChr08G004902 |
| 描述 | metal tolerance protein 4-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 58031423 - 58033881 / + |
| NCBI Gene ID | LOC130999555 |
|---|---|
| GeneID | 130999555 |
| locus_tag | - |
| NCBI Name | LOC130999555 |
| 原始查询 | LOC130999555 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | metal tolerance protein 4-like |
| 产物 | metal tolerance protein 4-like |
| Arabidopsis | AT3G58060 (AT3G58060)Cation efflux family protein [Source:NCBI gene (formerly Entrezgene);Acc:824975] identity=71.7; qcov=0.934; evalue=0; confidence=high |
| Rice | Os03g0226400 (OsMTP8.1)- identity=73.5; qcov=0.988; evalue=0; confidence=high |
| GO | GO:0005384 (manganese ion transmembrane transporter activity); GO:0006812 (monoatomic cation transport); GO:0016020 (membrane); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF01545 (Cation_efflux); PF16916 (ZT_dimer) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999555 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057781099.1 |
| 2 | Trans-golgi network | Trans-golgi network | 0.40000 | XP_057781099.1 |
| 3 | Vacuole | 液泡 | 0.40000 | XP_057781099.1 |
| 4 | Vacuole membrane | 液泡膜 | 0.40000 | XP_057781099.1 |
| 5 | Cytoplasmic vesicle | 细胞质囊泡 | 0.20000 | XP_057781099.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:58031525 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B110,B40,B5 |
Chr8:58031557 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C86 |
Chr8:58031656 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B110,B40 |
Chr8:58031666 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B128,B93 |
Chr8:58032154 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | B40 |
Chr8:58032154 |
AT |
A |
1bp_deletion | CDS_variant | 1 | B40 |
Chr8:58032230 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B76 |
Chr8:58032769 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B71,C45 |
Chr8:58032913 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B121,B81,B88,C25,D1 |
Chr8:58032935 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
Chr8:58033042 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr8:58033048 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057781099.1PF01545
Cation_efflux 116-309 aa
PF16916
ZT_dimer 314-389 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781099.1 |
Pfam | PF01545 |
Cation_efflux | Domain | 116 | 309 | 8.2e-27 | 95.0 | Cation efflux transmembrane domain |
XP_057781099.1 |
Pfam | PF16916 |
ZT_dimer | Domain | 314 | 389 | 2.8e-11 | 44.0 | Cation efflux protein, cytoplasmic domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。