Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004923`

染色体: Chr08 坐标: 58156099-58163537 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004923`
名称	SmilChr08G004923
描述	uncharacterized SmilChr08G004923
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	58156099 - 58163537 / `+`

ID 对照

NCBI Gene ID	`LOC130999574`
GeneID	`130999574`
locus_tag	`-`
NCBI Name	`LOC130999574`
原始查询	`LOC130999574`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832102]; symbol=emb2734; hit=AT5G19820; species=arabidopsis; confidence=high
产物	ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832102]; symbol=emb2734; hit=AT5G19820; species=arabidopsis; confidence=high
Arabidopsis	`AT5G19820` (emb2734) ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832102] identity=81.2; qcov=1; evalue=0; confidence=high
Rice	`Os07g0575100` (OJ1562_B11.122) - identity=75; qcov=0.977; evalue=0; confidence=high
GO	GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0006606 (protein import into nucleus); GO:0008139 (nuclear localization sequence binding); GO:0031267 (small GTPase binding); GO:0061608 (nuclear import signal receptor activity)
KEGG	smil03013 (Nucleocytoplasmic transport - Salvia miltiorrhiza (redroot sage))
Pfam	PF02985 (HEAT); PF13513 (HEAT_EZ); PF18808 (Importin_rep_4); PF18829 (Importin_rep_6); PF25574 (TPR_IMB1); PF25780 (TPR_IPO5)
InterPro	-
eggNOG	-
NR	GeneID:130999574

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057781116.1`
2	Nucleoplasm	核质	1.00000	`XP_057781116.1`
3	Cytoplasm	细胞质	1.00000	`XP_057781116.1`
4	Cytosol	细胞质基质	1.00000	`XP_057781116.1`
5	Nucleus membrane	核膜	0.40000	`XP_057781116.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:58156499`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B17,C73
`Chr8:58156677`	`C`	`T`	EMS_canonical_SNV	stop_gained	34	A15,A18,A24,B108,B119,B123,B129,B131,B132,B26,B34,B35,B39,B41,B60,B62,B72,B75,B83,C22,C27,C28,C35,C4,C41,C44,C64,C71,C74,C8,C82,D10,D3,D5
`Chr8:58157342`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B12,B27,B83,C53,D2
`Chr8:58157345`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B12,B27,B83,C53,D2
`Chr8:58157530`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B102,C47,C86
`Chr8:58157633`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr8:58158360`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B103,C74,C76
`Chr8:58158933`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr8:58159134`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B132
`Chr8:58159134`	`GC`	`G`	1bp_deletion	CDS_variant	1	B132
`Chr8:58160103`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:58161687`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B77,C29

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781116.1

1116 aa

558

1116

TPR_IPO5

Importin_rep_4

HEAT_EZ

HEAT

HEAT_EZ

TPR_IMB1

Importin_rep_6

HEAT

PF25780 TPR_IPO5 117-274 aa PF18808 Importin_rep_4 285-376 aa PF13513 HEAT_EZ 391-445 aa PF02985 HEAT 420-447 aa PF13513 HEAT_EZ 475-529 aa PF25574 TPR_IMB1 477-648 aa PF18829 Importin_rep_6 785-887 aa PF02985 HEAT 925-952 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781116.1`	Pfam	`PF25780`	TPR_IPO5	Repeat	117	274	5.5e-50	170.5	IPO5-like, TPR repeats
`XP_057781116.1`	Pfam	`PF18808`	Importin_rep_4	Repeat	285	376	2.9e-24	85.9	Importin repeat
`XP_057781116.1`	Pfam	`PF13513`	HEAT_EZ	Repeat	391	445	8.5e-36	122.5	HEAT-like repeat
`XP_057781116.1`	Pfam	`PF02985`	HEAT	Repeat	420	447	8.5e-22	75.9	HEAT repeat
`XP_057781116.1`	Pfam	`PF13513`	HEAT_EZ	Repeat	475	529	8.5e-36	122.5	HEAT-like repeat
`XP_057781116.1`	Pfam	`PF25574`	TPR_IMB1	Repeat	477	648	6.4e-26	91.7	Importin subunit beta-1-like, TPR repeats
`XP_057781116.1`	Pfam	`PF18829`	Importin_rep_6	Repeat	785	887	2.2e-20	73.7	Importin repeat 6
`XP_057781116.1`	Pfam	`PF02985`	HEAT	Repeat	925	952	8.5e-22	75.9	HEAT repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057925133.1
CCCGCTGCGAAGGCTTGTACCCGGCGCTTGGTGCGGGTGTACATTCCCTTCCTCGTTTCGCAACGAAAACGGATAGACAAAAATATCCCCGTCGATATAGAGATATATATATATAGATAGATTCAGAGAAACACCTCCAGTGCGTGGTCTCTGTGTGTGAGAGATAGAGTGAGAGAGCACACACCGACCTCCGTTTCTAGAGAGAGAGAGAGAGAGGGTTATCAGTTATCACATTCTCGACGTAGCAGAGCGCCACCTCT...

CDS

1 records

下载 CDS FASTA

LOC130999574
ATGGATGCCGAGTCGACTCAGCTCCAGCAGGCGCAGCTGATGGCGGTTCTGGGGCCGGACCCGGCGCCGTTCGAAACCCTAATCTCCCATTTGATGTCATCCGCCAACGAGCAGCGGTCGCAGGCCGAGTCGATCTTCAATTTGCTGAAGCAGAACGATCCGAACTCGCTCGCGCTGAAGCTCGCTCACCTGCTCTCCGCCTCCGTCCACCTCGAGTCGCGCGCCATGGCGGCCATCCTCCTGCGGAAGCAGTTGACCCG...

Protein

1 records

下载 Protein FASTA

XP_057781116.1
MDAESTQLQQAQLMAVLGPDPAPFETLISHLMSSANEQRSQAESIFNLLKQNDPNSLALKLAHLLSASVHLESRAMAAILLRKQLTRDEAFIWPHLTESTRSAVKNILLSAIQSEESKSIIKKLCDTVSELASSLIPDNQWPEILPFMFQCVTATSPKLQESAFLMFSQLAQFIGETLIPYITDLHTVFLNVLNNSPNPDVKIAALSAVINFIQCLSSSNDRDRFQDLLPAMMRTLTEALNSGQEATAQEALELLIELAG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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