当前解析结果
SmilChr08G004926| 统一新 Gene ID | SmilChr08G004926 |
|---|---|
| 名称 | SmilChr08G004926 |
| 描述 | tubulin alpha-5 chain-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 58171826 - 58174553 / - |
| NCBI Gene ID | LOC130999575 |
|---|---|
| GeneID | 130999575 |
| locus_tag | - |
| NCBI Name | LOC130999575 |
| 原始查询 | LOC130999575 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | tubulin alpha-5 chain-like |
| 产物 | tubulin alpha-5 chain-like |
| Arabidopsis | AT5G19780 (TUA5)tubulin alpha-5 [Source:NCBI gene (formerly Entrezgene);Acc:832098] identity=96.2; qcov=1; evalue=0; confidence=high |
| Rice | Os07g0574800 (OsTubA1)- identity=95.1; qcov=1; evalue=0; confidence=high |
| GO | GO:0000226 (microtubule cytoskeleton organization); GO:0000278 (mitotic cell cycle); GO:0005200 (structural constituent of cytoskeleton); GO:0005525 (GTP binding); GO:0005737 (cytoplasm); GO:0005874 (microtubule) |
| KEGG | smil04145 (Phagocytosis - Salvia miltiorrhiza (redroot sage)); smil04517 (IgSF CAM signaling - Salvia miltiorrhiza (redroot sage)); smil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00091 (Tubulin); PF03953 (Tubulin_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999575 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 0.80000 | XP_057781117.1 |
| 2 | Spindle pole | Spindle pole | 0.40000 | XP_057781117.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057781117.1 |
| 4 | Spindle | Spindle | 0.20000 | XP_057781117.1 |
| 5 | Cell projection | 细胞突起 | 0.20000 | XP_057781117.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:58172047 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B100,B77,C29 |
Chr8:58172095 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B46,B88 |
Chr8:58172152 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr8:58172221 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr8:58172250 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr8:58172440 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B124,B135,C76,D8 |
Chr8:58172540 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C78 |
Chr8:58172617 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B127,B4,B51,C63 |
Chr8:58173063 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B114,B3,C64,C66 |
Chr8:58173081 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr8:58173455 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B104,B112,B41,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781117.1PF00091
Tubulin 3-213 aa
PF03953
Tubulin_C 263-392 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781117.1 |
Pfam | PF00091 |
Tubulin | Domain | 3 | 213 | 3.5e-63 | 214.1 | Tubulin/FtsZ family, GTPase domain |
XP_057781117.1 |
Pfam | PF03953 |
Tubulin_C | Domain | 263 | 392 | 2.7e-51 | 173.7 | Tubulin C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。