Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004959`

染色体: Chr08 坐标: 58416730-58419212 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004959`
名称	SmilChr08G004959
描述	uncharacterized SmilChr08G004959
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	58416730 - 58419212 / `-`

ID 对照

NCBI Gene ID	`LOC130999614`
GeneID	`130999614`
locus_tag	`-`
NCBI Name	`LOC130999614`
原始查询	`LOC130999614`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	oxidoreductase [Source:NCBI gene (formerly Entrezgene);Acc:827783]; symbol=AT4G20350; hit=AT4G20350; species=arabidopsis; confidence=high
产物	oxidoreductase [Source:NCBI gene (formerly Entrezgene);Acc:827783]; symbol=AT4G20350; hit=AT4G20350; species=arabidopsis; confidence=high
Arabidopsis	`AT4G20350` (AT4G20350) oxidoreductase [Source:NCBI gene (formerly Entrezgene);Acc:827783] identity=57.4; qcov=0.947; evalue=3.47e-95; confidence=high
Rice	`Os10g0420000` - identity=49.8; qcov=0.992; evalue=2.52e-80; confidence=high
GO	-
KEGG	-
Pfam	PF13532 (2OG-FeII_Oxy_2)
InterPro	-
eggNOG	-
NR	GeneID:130999614

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057781180.1`
2	Cytosol	细胞质基质	1.00000	`XP_057781180.1`
3	Cytoplasm	细胞质	0.80000	`XP_057781181.1`
4	Chromosome	染色体	0.00000	`XP_057781180.1`
5	Centromere	着丝粒	0.00000	`XP_057781180.1`

进入亚细胞定位查询

EMS 诱变突变

该基因暂未检索到已上线的精选 EMS CDS / LoF 突变，或 EMS 突变库仍在构建。

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781180.1

278 aa

139

278

2OG-FeII_Oxy_2

PF13532 2OG-FeII_Oxy_2 29-266 aa

XP_057781181.1

265 aa

132

265

2OG-FeII_Oxy_2

PF13532 2OG-FeII_Oxy_2 55-253 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781180.1`	Pfam	`PF13532`	2OG-FeII_Oxy_2	Domain	29	266	1e-10	42.8	2OG-Fe(II) oxygenase superfamily
`XP_057781181.1`	Pfam	`PF13532`	2OG-FeII_Oxy_2	Domain	55	253	1.2e-11	45.9	2OG-Fe(II) oxygenase superfamily

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057925198.1
ATGGAAAAGATATTGGGAGTGGAAGGAGGAGAGAAGGAAGTTCTGGAATTGAACAAGTATGTTGTGGGTTCGGTGCCGACTGTCATGTACATTCCTGAGTACATCTCGACTGCTGAAGAAGACCTCCTCCTCAAAAACATTTACCAAGCGCCGCTTTCCAAATGGAAGACTTTGAAGAATCGGAGACTCCAAAATTGGGGAGGAGTTGTCCACGAAAAGGGTCTTCTTGCCCAAGAATTGCCATCCTGGCTAAAAAGAGT...

XM_057925197.1
ATGGAAAAGATATTGGGAGTGGAAGGAGGAGAGAAGGAAGTTCTGGAATTGAACAAGTATGTTGTGGGTTCGGTGCCGACTGTCATGTACATTCCTGAGTACATCTCGACTGCTGAAGAAGACCTCCTCCTCAAAAACATTTACCAAGCGCCGCTTTCCAAATGGAAGACTTTGAAGAATCGGAGACTCCAAAATTGGGGAGGAGTTGTCCACGAAAAGGGTCTTCTTGCCCAAGAATCAACAGAAGTTGAATGTCCAAG...

CDS

2 records

下载 CDS FASTA

LOC130999614
ATGGAAAAGATATTGGGAGTGGAAGGAGGAGAGAAGGAAGTTCTGGAATTGAACAAGTATGTTGTGGGTTCGGTGCCGACTGTCATGTACATTCCTGAGTACATCTCGACTGCTGAAGAAGACCTCCTCCTCAAAAACATTTACCAAGCGCCGCTTTCCAAATGGAAGACTTTGAAGAATCGGAGACTCCAAAATTGGGGAGGAGTTGTCCACGAAAAGGGTCTTCTTGCCCAAGAATTGCCATCCTGGCTAAAAAGAGT...

Protein

2 records

下载 Protein FASTA

XP_057781180.1
MEKILGVEGGEKEVLELNKYVVGSVPTVMYIPEYISTAEEDLLLKNIYQAPLSKWKTLKNRRLQNWGGVVHEKGLLAQESTEVECPSSLCFAVPSWLKRVTNRICEESKLFPSAINHVLINEYLPDQGIMPHQDGPAYMPVVAILSLGSPVVMDFVPHPNLESTAETSENDTQDIIYEPSVTKGYKSSKYLPFSVVLMPRSLLIFKDMAYSDYLHGIKDSENHCYDEAVNAINGPSHDAETLAGLKIDGGDRVVHRTTTR...

XP_057781181.1
MEKILGVEGGEKEVLELNKYVVGSVPTVMYIPEYISTAEEDLLLKNIYQAPLSKWKTLKNRRLQNWGGVVHEKGLLAQELPSWLKRVTNRICEESKLFPSAINHVLINEYLPDQGIMPHQDGPAYMPVVAILSLGSPVVMDFVPHPNLESTAETSENDTQDIIYEPSVTKGYKSSKYLPFSVVLMPRSLLIFKDMAYSDYLHGIKDSENHCYDEAVNAINGPSHDAETLAGLKIDGGDRVVHRTTTRVSLTCRLVTKVHK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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