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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G003761

染色体: Chr08 坐标: 43021298-43024148 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G003761
名称SmilChr08G003761
描述calcium-dependent protein kinase 26-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向43021298 - 43024148 / -

ID 对照

NCBI Gene IDLOC130999622
GeneID130999622
locus_tag-
NCBI NameLOC130999622
原始查询LOC130999622

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述calcium-dependent protein kinase 26-like
产物calcium-dependent protein kinase 26-like
ArabidopsisAT3G10660 (CPK2)
calmodulin-domain protein kinase cdpk isoform 2 [Source:NCBI gene (formerly Entrezgene);Acc:820235]
identity=60.1; qcov=1.07; evalue=0; confidence=high
RiceOs03g0788500 (CDPK10)
-
identity=62.9; qcov=1.02; evalue=0; confidence=high
GOGO:0004683 (calcium/calmodulin-dependent protein kinase activity); GO:0005509 (calcium ion binding); GO:0005516 (calmodulin binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0009931 (calcium-dependent protein serine/threonine kinase activity); GO:0018105 (peptidyl-serine phosphorylation); GO:0035556 (intracellular signal transduction); GO:0046777 (protein autophosphorylation)
KEGGsmil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
PfamPF00036 (EF-hand_1); PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF13202 (EF-hand_5); PF13405 (EF-hand_6); PF13499 (EF-hand_7); PF13833 (EF-hand_8)
InterPro-
eggNOG-
NRGeneID:130999622

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 0.80000 XP_057781192.1
2 Cytosol 细胞质基质 0.60000 XP_057781192.1
3 Cytoplasm 细胞质 0.20000 XP_057781192.1
4 Nucleus 细胞核 0.00000 XP_057781192.1
5 Chromosome 染色体 0.00000 XP_057781192.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:43021686 G A EMS_canonical_SNV CDS_variant 1 B27
Chr8:43022924 C T EMS_canonical_SNV CDS_variant 4 B41,B71,B89,C70
Chr8:43022974 C T EMS_canonical_SNV CDS_variant 1 A9
Chr8:43023053 G A EMS_canonical_SNV CDS_variant 2 A4,C20
Chr8:43023071 G A EMS_canonical_SNV CDS_variant 5 A4,C20,C26,C40,C8
Chr8:43023073 CGA C 2bp_deletion frameshift_variant 5 A4,C20,C26,C40,C8
Chr8:43023073 CGA C 2bp_deletion CDS_variant 5 A4,C20,C26,C40,C8
Chr8:43023089 G A EMS_canonical_SNV CDS_variant 2 C40,C8
Chr8:43023098 G A EMS_canonical_SNV CDS_variant 3 C20,C40,C8
Chr8:43023102 G GT 1bp_insertion frameshift_variant 3 C20,C40,C8
Chr8:43023102 G GT 1bp_insertion CDS_variant 3 C20,C40,C8
Chr8:43023109 C CAA 2bp_insertion frameshift_variant 3 C20,C40,C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781192.1
584 aa
N
1
292
584
PK_Tyr_Ser-Thr
Pkinase
EF-hand_5
EF-hand_1
EF-hand_6
EF-hand_7
EF-hand_8
EF-hand_8
EF-hand_7
EF-hand_1
EF-hand_6
EF-hand_5
EF-hand_5
EF-hand_1
EF-hand_8
C
PF07714 PK_Tyr_Ser-Thr 123-374 aa PF00069 Pkinase 123-379 aa PF13202 EF-hand_5 427-448 aa PF00036 EF-hand_1 427-452 aa PF13405 EF-hand_6 427-455 aa PF13499 EF-hand_7 427-486 aa PF13833 EF-hand_8 428-448 aa PF13833 EF-hand_8 455-487 aa PF13499 EF-hand_7 497-557 aa PF00036 EF-hand_1 499-524 aa PF13405 EF-hand_6 499-527 aa PF13202 EF-hand_5 500-521 aa PF13202 EF-hand_5 533-557 aa PF00036 EF-hand_1 533-558 aa PF13833 EF-hand_8 533-559 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057781192.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 123 374 2.7e-26 93.2 Protein tyrosine and serine/threonine kinase
XP_057781192.1 Pfam PF00069 Pkinase Domain 123 379 8.9e-78 262.0 Protein kinase domain
XP_057781192.1 Pfam PF13202 EF-hand_5 Domain 427 448 5.5e-23 80.0 EF hand
XP_057781192.1 Pfam PF00036 EF-hand_1 Domain 427 452 2.1e-32 108.9 EF hand domain
XP_057781192.1 Pfam PF13405 EF-hand_6 Domain 427 455 2.3e-24 83.4 EF-hand domain
XP_057781192.1 Pfam PF13499 EF-hand_7 Domain 427 486 2.9e-29 101.9 EF-hand domain pair
XP_057781192.1 Pfam PF13833 EF-hand_8 Domain 428 448 2.3e-22 79.2 EF-hand domain pair
XP_057781192.1 Pfam PF13833 EF-hand_8 Domain 455 487 2.3e-22 79.2 EF-hand domain pair
XP_057781192.1 Pfam PF13499 EF-hand_7 Domain 497 557 2.9e-29 101.9 EF-hand domain pair
XP_057781192.1 Pfam PF00036 EF-hand_1 Domain 499 524 2.1e-32 108.9 EF hand domain
XP_057781192.1 Pfam PF13405 EF-hand_6 Domain 499 527 2.3e-24 83.4 EF-hand domain
XP_057781192.1 Pfam PF13202 EF-hand_5 Domain 500 521 5.5e-23 80.0 EF hand
XP_057781192.1 Pfam PF13202 EF-hand_5 Domain 533 557 5.5e-23 80.0 EF hand
XP_057781192.1 Pfam PF00036 EF-hand_1 Domain 533 558 2.1e-32 108.9 EF hand domain
XP_057781192.1 Pfam PF13833 EF-hand_8 Domain 533 559 2.3e-22 79.2 EF-hand domain pair

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057925209.1
CGTGCACTTTGGAAACATTCCAAGCCTGCTAACTCAAATATGAATTTCTCTCTCCTCTCTCTCACATTTCCCTTCGTTTCAACAAAAGTGTGTGGCGACACATTCAAAACCCTCTCCCAAAATCCACGGTTTTCACACACTTGCTACGTCACATCCCATGTATGAAAAGCCCAAGTTAAATAGATAAATATTATTCAGACTGACTCGGTTACACACACATAGTTACAATTTTTCTCACTTTCTTTCCATCTTCTCATTTC...

CDS

1 records

下载 CDS FASTA
LOC130999622
ATGGGAAACAATTGTGTTCACGGCAAGATCAACGAAGAAGGCGCTCTCTACGCCGTTTCGCGCCTATTTTGGCCGCCGTCGAAATCACCAGAAGACGCGAGCGCTTGCCGCGAAGAAAAAGGCGGTCCAGCCGGCGTTGCCAGCACGCCTCCAAAGCCGATGAAAATCGAGCACGAATTAGTCAAGCCGGTGATCATCGATGTAATTAGGAAAGCTCCACAGACAGAGCAAGTGATCATGATCGTGACGGAGAAACCGAA...

Protein

1 records

下载 Protein FASTA
XP_057781192.1
MGNNCVHGKINEEGALYAVSRLFWPPSKSPEDASACREEKGGPAGVASTPPKPMKIEHELVKPVIIDVIRKAPQTEQVIMIVTEKPKPPPKKPNAVKRKMSIGLEVDSVLRTKTGHLKQRFDLGDKLGHGQFGTTFLCTERKTGNKYACKSIAKRKLLNKEDLEDVRREIEILHHLSGHHNVVSIEGAYEDAVAVHVVMELCKGGELFDRIVKRGHYSEKKASELTRTIVGVLEACHSLGVMHRDLKPENFLFVTGAEDS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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