当前解析结果
SmilChr08G000036| 统一新 Gene ID | SmilChr08G000036 |
|---|---|
| 名称 | SmilChr08G000036 |
| 描述 | uncharacterized SmilChr08G000036 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 250768 - 252949 / - |
| NCBI Gene ID | LOC130999663 |
|---|---|
| GeneID | 130999663 |
| locus_tag | - |
| NCBI Name | LOC130999663 |
| 原始查询 | LOC130999663 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:819006]; symbol=AT2G44010; hit=AT2G44010; species=arabidopsis; confidence=low |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:819006]; symbol=AT2G44010; hit=AT2G44010; species=arabidopsis; confidence=low |
| Arabidopsis | AT2G44010 (AT2G44010)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:819006] identity=35.3; qcov=0.917; evalue=5.31e-11; confidence=low |
| Rice | Os01g0888900- identity=29.8; qcov=0.855; evalue=1.72e-06; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999663 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057781248.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057781248.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057781248.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057781248.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057781248.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:250917 |
AAT |
A |
2bp_deletion | frameshift_variant | 3 | B108,B43,D1 |
Chr8:250925 |
ATG |
* |
2bp_deletion | CDS_variant | 4 | A13,B46,B63,D8 |
Chr8:250945 |
G |
A |
EMS_canonical_SNV | stop_gained | 10 | A3,B108,B114,B43,B57,B71,B98,C49,C58,D1 |
Chr8:250946 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A3,B128,B34,D10 |
Chr8:250955 |
C |
T |
EMS_canonical_SNV | stop_gained | 8 | A22,B103,B111,B125,B35,C43,C52,C60 |
Chr8:250956 |
C |
T |
EMS_canonical_SNV | stop_gained | 5 | B132,B17,C22,C80,D9 |
Chr8:250956 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B132,B17,C22,C80,D9 |
Chr8:250985 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B21,B79,C45,C78 |
Chr8:250987 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B108,B43,D1,D10 |
Chr8:250997 |
ATC |
A |
2bp_deletion | frameshift_variant | 8 | B14,B57,C18,C49,C55,C64,C87,D8 |
Chr8:252372 |
TG |
T |
1bp_deletion | frameshift_variant | 24 | A20,A25,B1,B33,B38,B42,B49,B50,B54,B60,B64,B78,C27,C35,C38,C42,C46,C53,C54,C56,C75,C8,C83,D9 |
Chr8:252496 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A11,B7,B98 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。