Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000071`

染色体: Chr08 坐标: 407702-418069 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000071`
名称	SmilChr08G000071
描述	probable disease resistance protein At1g58602
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	407702 - 418069 / `+`

ID 对照

NCBI Gene ID	`LOC130999692`
GeneID	`130999692`
locus_tag	`-`
NCBI Name	`LOC130999692`
原始查询	`LOC130999692`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable disease resistance protein At1g58602
产物	probable disease resistance protein At1g58602
Arabidopsis	`AT5G43470` (RPP8) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367] identity=32.6; qcov=1.03; evalue=1.24e-127; confidence=low
Rice	`Os10g0358200` - identity=28.2; qcov=1.04; evalue=4.57e-70; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:130999692

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057781288.1`
2	Nucleus	细胞核	0.00000	`XP_057781288.1`
3	Chromosome	染色体	0.00000	`XP_057781288.1`
4	Centromere	着丝粒	0.00000	`XP_057781288.1`
5	Chromatin	染色质	0.00000	`XP_057781288.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:407844`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B10,C61,C64,C76,D8
`Chr8:407856`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C39,D7
`Chr8:407928`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A19,B114,C14,C27
`Chr8:407976`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B120,B25,B30,B32,C82
`Chr8:407982`	`GA`	`G`	1bp_deletion	frameshift_variant	4	A24,B37,B58,C71
`Chr8:407982`	`GA`	`G`	1bp_deletion	CDS_variant	4	A24,B37,B58,C71
`Chr8:408070`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B131,B75
`Chr8:408085`	`GAC`	`G`	2bp_deletion	frameshift_variant	16	A14,B112,B124,B23,B29,B46,B90,B97,C23,C28,C45,C46,C67,C68,C78,C8
`Chr8:408089`	`T`	`TGG`	2bp_insertion	frameshift_variant	16	A14,B112,B124,B23,B29,B46,B90,B97,C23,C28,C45,C46,C67,C68,C78,C8
`Chr8:408099`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B64
`Chr8:408102`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr8:408106`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781288.1

931 aa

466

931

Rx_N

NB-ARC

WHD_DRP

LRR_14

PF18052 Rx_N 5-89 aa PF00931 NB-ARC 172-345 aa PF23559 WHD_DRP 428-507 aa PF23598 LRR_14 564-897 aa

XP_057781289.1

931 aa

466

931

Rx_N

NB-ARC

WHD_DRP

LRR_14

PF18052 Rx_N 5-89 aa PF00931 NB-ARC 172-345 aa PF23559 WHD_DRP 428-507 aa PF23598 LRR_14 564-897 aa

XP_057781290.1

931 aa

466

931

Rx_N

NB-ARC

WHD_DRP

LRR_14

PF18052 Rx_N 5-89 aa PF00931 NB-ARC 172-345 aa PF23559 WHD_DRP 428-507 aa PF23598 LRR_14 564-897 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781288.1`	Pfam	`PF18052`	Rx_N	Domain	5	89	3.1e-19	69.6	Rx N-terminal domain
`XP_057781288.1`	Pfam	`PF00931`	NB-ARC	Domain	172	345	1.8e-36	126.0	NB-ARC domain
`XP_057781288.1`	Pfam	`PF23559`	WHD_DRP	Domain	428	507	7.6e-12	45.8	Disease resistance protein Winged helix domain
`XP_057781288.1`	Pfam	`PF23598`	LRR_14	Repeat	564	897	1.7e-26	93.5	Leucine-rich repeat region
`XP_057781289.1`	Pfam	`PF18052`	Rx_N	Domain	5	89	3.1e-19	69.6	Rx N-terminal domain
`XP_057781289.1`	Pfam	`PF00931`	NB-ARC	Domain	172	345	1.8e-36	126.0	NB-ARC domain
`XP_057781289.1`	Pfam	`PF23559`	WHD_DRP	Domain	428	507	7.6e-12	45.8	Disease resistance protein Winged helix domain
`XP_057781289.1`	Pfam	`PF23598`	LRR_14	Repeat	564	897	1.7e-26	93.5	Leucine-rich repeat region
`XP_057781290.1`	Pfam	`PF18052`	Rx_N	Domain	5	89	3.1e-19	69.6	Rx N-terminal domain
`XP_057781290.1`	Pfam	`PF00931`	NB-ARC	Domain	172	345	1.8e-36	126.0	NB-ARC domain
`XP_057781290.1`	Pfam	`PF23559`	WHD_DRP	Domain	428	507	7.6e-12	45.8	Disease resistance protein Winged helix domain
`XP_057781290.1`	Pfam	`PF23598`	LRR_14	Repeat	564	897	1.7e-26	93.5	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057925306.1
TCTCACCACTACCAAATCAAGAGTGTTCAACCAATCAATTTGATATATCGGAGCTTCCCCAAATTAGCAAATCAAGAGTGTTCCACCAATCAATTAGACCAAAGAAATCTGAGCTTCCCCCAAATTATTGCAATGGCAGAAGCAGTGGTGTCGACTGCTCTAGAAACCTTGCGCGATTTGTTGGTGGAAGAAGCAAGGTTTTTATATGGTGTGGGTGACCAAGTGAGGGAGCTCGAGATCCAGCTCAAAGAGATGAAATG...

XM_057925305.1
TCTCACCACTACCAAATCAAGAGTGTTCAACCAATCAATTTGATATATCGGAGCTTCCCCAAATTAGCAAATCAAGAGTGTTCCACCAATCAATTAGACCAAAGAAATCTGAGCTTCCCCCAAATTATTGCAATGGCAGAAGCAGTGGTGTCGACTGCTCTAGAAACCTTGCGCGATTTGTTGGTGGAAGAAGCAAGGTTTTTATATGGTGTGGGTGACCAAGTGAGGGAGCTCGAGATCCAGCTCAAAGAGATGAAATG...

CDS

3 records

下载 CDS FASTA

LOC130999692
ATGGCAGAAGCAGTGGTGTCGACTGCTCTAGAAACCTTGCGCGATTTGTTGGTGGAAGAAGCAAGGTTTTTATATGGTGTGGGTGACCAAGTGAGGGAGCTCGAGATCCAGCTCAAAGAGATGAAATGTCTCCTCAAAGATGCCGACAGAAGACGACATGAAAATGAAACCATTTTTAATTGGATCTCAGAGATCAAAGATCTTGTGTACAGAGCAGAAGCTGCCATTGAAAGACACGCAGCTCATCAAGTGACTTCAAG...

Protein

3 records

下载 Protein FASTA

XP_057781288.1
MAEAVVSTALETLRDLLVEEARFLYGVGDQVRELEIQLKEMKCLLKDADRRRHENETIFNWISEIKDLVYRAEAAIERHAAHQVTSRRRRGLRQLVRKCSCSLEEYKSIHQLGSEISPIKSRLERINKEMLESGIKKSIINNTYEGESSSANNRARKSFPEFEIGECFVGMKDELKQLLHLLVEDEKHRVISVWGMGGSGKTTIAKKLYNETNTNFDLCAWVCISQQCQSFQSVWNDVLMQLQHQNTKDGPKIREDVTSL...

XP_057781289.1
MAEAVVSTALETLRDLLVEEARFLYGVGDQVRELEIQLKEMKCLLKDADRRRHENETIFNWISEIKDLVYRAEAAIERHAAHQVTSRRRRGLRQLVRKCSCSLEEYKSIHQLGSEISPIKSRLERINKEMLESGIKKSIINNTYEGESSSANNRARKSFPEFEIGECFVGMKDELKQLLHLLVEDEKHRVISVWGMGGSGKTTIAKKLYNETNTNFDLCAWVCISQQCQSFQSVWNDVLMQLQHQNTKDGPKIREDVTSL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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