当前解析结果
SmilChr01G004132| 统一新 Gene ID | SmilChr01G004132 |
|---|---|
| 名称 | SmilChr01G004132 |
| 描述 | probable inorganic phosphate transporter 1-7 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 59838726 - 59842156 / + |
| NCBI Gene ID | LOC130999702 |
|---|---|
| GeneID | 130999702 |
| locus_tag | - |
| NCBI Name | LOC130999702 |
| 原始查询 | LOC130999702 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable inorganic phosphate transporter 1-7 |
| 产物 | probable inorganic phosphate transporter 1-7 |
| Arabidopsis | AT3G54700 (PHT1;7)phosphate transporter 1;7 [Source:NCBI gene (formerly Entrezgene);Acc:824635] identity=81.6; qcov=1; evalue=0; confidence=high |
| Rice | Os04g0186400 (PT4)- identity=74.4; qcov=1; evalue=0; confidence=high |
| GO | GO:0005315 (phosphate transmembrane transporter activity); GO:0006817 (phosphate ion transport); GO:0016020 (membrane); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF00083 (Sugar_tr); PF07690 (MFS_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999702 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057781307.1 |
| 2 | Cytoplasmic vesicle | 细胞质囊泡 | 0.20000 | XP_057781307.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057781307.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057781307.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057781307.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:59839509 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr1:59839575 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A19,B137,B32 |
Chr1:59839658 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | D6 |
Chr1:59839658 |
GC |
G |
1bp_deletion | CDS_variant | 1 | D6 |
Chr1:59839678 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A20 |
Chr1:59839756 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B108,B130,C23 |
Chr1:59839758 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B15,B81,C12,C77 |
Chr1:59839800 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C16 |
Chr1:59839842 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B69,B85 |
Chr1:59839938 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr1:59840033 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
Chr1:59840074 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B69,D10,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057781307.1PF00083
Sugar_tr 27-514 aa
PF07690
MFS_1 69-457 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781307.1 |
Pfam | PF00083 |
Sugar_tr | Family | 27 | 514 | 8.6e-53 | 180.5 | Sugar (and other) transporter |
XP_057781307.1 |
Pfam | PF07690 |
MFS_1 | Family | 69 | 457 | 2.4e-22 | 80.1 | Major Facilitator Superfamily |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。