当前解析结果
SmilChr08G000097| 统一新 Gene ID | SmilChr08G000097 |
|---|---|
| 名称 | SmilChr08G000097 |
| 描述 | probable disease resistance protein At1g58602 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 591222 - 605169 / + |
| NCBI Gene ID | LOC130999703 |
|---|---|
| GeneID | 130999703 |
| locus_tag | - |
| NCBI Name | LOC130999703 |
| 原始查询 | LOC130999703 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable disease resistance protein At1g58602 |
| 产物 | probable disease resistance protein At1g58602 |
| Arabidopsis | AT1G58390 (AT1G58390)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:842208] identity=33.5; qcov=1.02; evalue=2.6e-130; confidence=low |
| Rice | Os07g0186500- identity=26.9; qcov=1.03; evalue=5.51e-72; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999703 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057781304.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057781304.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057781304.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057781304.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057781304.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:591533 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B11,B93,C1,C19,C85 |
Chr8:591536 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C13,C77 |
Chr8:591545 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B83 |
Chr8:591552 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C4,C72 |
Chr8:591566 |
ATG |
A |
2bp_deletion | frameshift_variant | 2 | B139,B67 |
Chr8:591566 |
ATG |
A |
2bp_deletion | CDS_variant | 2 | B139,B67 |
Chr8:591597 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B112,B47,D7 |
Chr8:591598 |
C |
T |
EMS_canonical_SNV | stop_gained | 5 | A13,A14,B18,B67,C87 |
Chr8:591598 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A13,A14,B18,B67,C87 |
Chr8:591612 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B20,C78 |
Chr8:591615 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B53,C56 |
Chr8:591733 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B110 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781304.1PF18052
Rx_N 5-89 aa
PF00931
NB-ARC 172-344 aa
PF23559
WHD_DRP 433-510 aa
PF23598
LRR_14 585-904 aa
XP_057781305.1PF18052
Rx_N 5-89 aa
PF00931
NB-ARC 172-344 aa
PF23559
WHD_DRP 428-505 aa
PF23598
LRR_14 581-884 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781304.1 |
Pfam | PF18052 |
Rx_N | Domain | 5 | 89 | 1.9e-19 | 70.3 | Rx N-terminal domain |
XP_057781304.1 |
Pfam | PF00931 |
NB-ARC | Domain | 172 | 344 | 2.9e-35 | 122.1 | NB-ARC domain |
XP_057781304.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 433 | 510 | 1.8e-12 | 47.8 | Disease resistance protein Winged helix domain |
XP_057781304.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 585 | 904 | 5.1e-28 | 98.5 | Leucine-rich repeat region |
XP_057781305.1 |
Pfam | PF18052 |
Rx_N | Domain | 5 | 89 | 3.4e-19 | 69.4 | Rx N-terminal domain |
XP_057781305.1 |
Pfam | PF00931 |
NB-ARC | Domain | 172 | 344 | 3e-35 | 122.0 | NB-ARC domain |
XP_057781305.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 428 | 505 | 1.4e-11 | 45.0 | Disease resistance protein Winged helix domain |
XP_057781305.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 581 | 884 | 2.8e-26 | 92.9 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。