当前解析结果
SmilChr08G000105| 统一新 Gene ID | SmilChr08G000105 |
|---|---|
| 名称 | SmilChr08G000105 |
| 描述 | 6,7,8-trihydroxycoumarin synthase-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 644485 - 647024 / + |
| NCBI Gene ID | LOC130999725 |
|---|---|
| GeneID | 130999725 |
| locus_tag | - |
| NCBI Name | LOC130999725 |
| 原始查询 | LOC130999725 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 6,7,8-trihydroxycoumarin synthase-like |
| 产物 | 6%2C7%2C8-trihydroxycoumarin synthase-like |
| Arabidopsis | AT4G31500 (CYP83B1)cytochrome P450, family 83, subfamily B, polypeptide 1 [Source:NCBI gene (formerly Entrezgene);Acc:829277] identity=46; qcov=1; evalue=2.55e-158; confidence=high |
| Rice | Os12g0268000 (sl)- identity=37.8; qcov=0.957; evalue=7.77e-126; confidence=medium |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding) |
| KEGG | - |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999725 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057781327.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.80000 | XP_057781327.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057781327.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781327.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781327.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:644631 |
CT |
C |
1bp_deletion | frameshift_variant | 12 | A5,A9,B125,B129,B134,B21,B32,B38,B39,C76,C87,D4 |
Chr8:644733 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B130,D10,D11 |
Chr8:644772 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A8,B115,B53,B83 |
Chr8:644870 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A8,B115,B40,B53,B83 |
Chr8:644967 |
GA |
G |
1bp_deletion | frameshift_variant | 99 | A11,A14,A15,A18,A19,A21,A23,A24,A3,A6,B10,B100,B101,B102,B106,B109,B111,B112,B113,B114,B12,B124,B127,B128,B130,B131,B136,B16,B18,B20,B27,B30,B31,B33,B34,B4,B47,B48,B54,B57,B60,B61,B62,B63,B72,B74,B75,B79,B80,B81,B82,B87,B88,B89,B90,B91,B92,B93,B94,B95,B97,C1,C10,C11,C15,C18,C23,C26,C28,C3,C31,C36,C37,C40,C43,C46,C47,C48,C50,C52,C53,C56,C59,C62,C69,C70,C72,C73,C75,C79,C8,C82,C83,C9,D1,D10,D3,D5,D8 |
Chr8:644976 |
TTC |
T |
2bp_deletion | frameshift_variant | 16 | A23,A4,B113,B12,B127,B20,B72,B80,B87,B9,C31,C40,C48,C56,C79,C83 |
Chr8:644988 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr8:645014 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A15,B110,B67,C54,D4 |
Chr8:645061 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B83,D7 |
Chr8:645069 |
C |
T |
EMS_canonical_SNV | stop_gained | 7 | B128,B87,B95,C27,C37,C7,D9 |
Chr8:645081 |
GTC |
G |
2bp_deletion | frameshift_variant | 1 | C20 |
Chr8:645081 |
GTC |
G |
2bp_deletion | CDS_variant | 1 | C20 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781327.1PF00067
p450 32-499 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781327.1 |
Pfam | PF00067 |
p450 | Domain | 32 | 499 | 2.9e-105 | 353.5 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。