Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000106`

染色体: Chr08 坐标: 648931-653770 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000106`
名称	SmilChr08G000106
描述	chalcone synthase-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	648931 - 653770 / `-`

ID 对照

NCBI Gene ID	`LOC130999726`
GeneID	`130999726`
locus_tag	`-`
NCBI Name	`LOC130999726`
原始查询	`LOC130999726`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	chalcone synthase-like
产物	chalcone synthase-like
Arabidopsis	`AT5G13930` (TT4) Chalcone and stilbene synthase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831241] identity=65.4; qcov=0.995; evalue=0; confidence=high
Rice	`Os11g0530600` (CHS*) - identity=67.3; qcov=0.99; evalue=0; confidence=high
GO	GO:0016747 (acyltransferase activity, transferring groups other than amino-acyl groups); GO:0030639 (polyketide biosynthetic process)
KEGG	smil00941 (Flavonoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil04712 (Circadian rhythm - plant - Salvia miltiorrhiza (redroot sage))
Pfam	PF00195 (Chal_sti_synt_N); PF02797 (Chal_sti_synt_C); PF08545 (ACP_syn_III)
InterPro	-
eggNOG	-
NR	GeneID:130999726

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057781328.1`
2	Endoplasmic reticulum	内质网	0.20000	`XP_057781328.1`
3	Peroxisome	过氧化物酶体	0.20000	`XP_057781328.1`
4	Nucleus	细胞核	0.00000	`XP_057781328.1`
5	Chromosome	染色体	0.00000	`XP_057781328.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:649236`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A5,B114
`Chr8:649245`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:649292`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr8:649297`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A7,C33
`Chr8:649305`	`C`	`T`	EMS_canonical_SNV	stop_gained	2	B114,C47
`Chr8:649305`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B114,C47
`Chr8:649342`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:649343`	`GC`	`G`	1bp_deletion	frameshift_variant	2	A7,C33
`Chr8:649343`	`GC`	`G`	1bp_deletion	CDS_variant	2	A7,C33
`Chr8:649370`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr8:649382`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B118,B64,C7
`Chr8:649479`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A2,C14

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781328.1

392 aa

196

392

Chal_sti_synt_N

ACP_syn_III

Chal_sti_synt_C

PF00195 Chal_sti_synt_N 5-229 aa PF08545 ACP_syn_III 162-229 aa PF02797 Chal_sti_synt_C 239-389 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781328.1`	Pfam	`PF00195`	Chal_sti_synt_N	Domain	5	229	5.8e-110	366.8	Chalcone and stilbene synthases, N-terminal domain
`XP_057781328.1`	Pfam	`PF08545`	ACP_syn_III	Domain	162	229	1.2e-06	29.0	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
`XP_057781328.1`	Pfam	`PF02797`	Chal_sti_synt_C	Domain	239	389	9.5e-61	205.0	Chalcone and stilbene synthases, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057925345.1
TAGACGAGGCTAGCTAGCTATTGTCTCTTATATATAACCCCCAATGCCCGCATAACATTTTACAACAAACACAACACTGTCTCCAAAGCAAGCAACAATTTTTCCGGCGATAAAAATGGCAAGCGTGGAGGAGATCCGCCGTGCTCGACGGGCCGAGGGTCCGGCCACCGTGTTGGCGATCGGCACCGCCACGCCGCCGAACTGTGTCGAGCAGAGCTCGTTTCCCGATTACTATTTCCGTGTTACAAACAGTGAGCATA...

CDS

1 records

下载 CDS FASTA

LOC130999726
ATGGCAAGCGTGGAGGAGATCCGCCGTGCTCGACGGGCCGAGGGTCCGGCCACCGTGTTGGCGATCGGCACCGCCACGCCGCCGAACTGTGTCGAGCAGAGCTCGTTTCCCGATTACTATTTCCGTGTTACAAACAGTGAGCATAAGACCGAACTCAAAGAGAAATTCATGCGCATTTGCGAGAATTCGATGATCAAGAAACGCTACATGCACCTAACGGAGGATCTCCTCAAGGAAAACCCGAACATCGCCGCCTACTC...

Protein

1 records

下载 Protein FASTA

XP_057781328.1
MASVEEIRRARRAEGPATVLAIGTATPPNCVEQSSFPDYYFRVTNSEHKTELKEKFMRICENSMIKKRYMHLTEDLLKENPNIAAYSAPSLSVRQEMVEVEVPKLGQEAAEKAIKEWGQPKSKITHLIFCTSSVSLDLPGGDYRLASLLGLHPSVIRTMMCQHGCYGGAAALRLAKDMAENNAAARVLVVCCEITAICFRGPSEAHVGDLVGQALFADGAAAVIVGADPPPAAERPLFQIISAAQATIPGSDDRVRGRMR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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