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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G000124

染色体: Chr08 坐标: 779299-781278 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G000124
名称SmilChr08G000124
描述pentatricopeptide repeat-containing protein At1g63330-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向779299 - 781278 / +

ID 对照

NCBI Gene IDLOC130999743
GeneID130999743
locus_tag-
NCBI NameLOC130999743
原始查询LOC130999743

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g63330-like
产物pentatricopeptide repeat-containing protein At1g63330-like
ArabidopsisAT1G12300 (AT1G12300)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837784]
identity=36; qcov=0.982; evalue=4.29e-124; confidence=medium
RiceOs10g0495200 (Rf4)
-
identity=32.2; qcov=0.87; evalue=3.47e-90; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130999743

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057781343.1
2 Chloroplast 叶绿体 0.20000 XP_057781343.1
3 Nucleus 细胞核 0.00000 XP_057781343.1
4 Chromosome 染色体 0.00000 XP_057781343.1
5 Centromere 着丝粒 0.00000 XP_057781343.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:779325 G A EMS_canonical_SNV CDS_variant 1 B18
Chr8:779345 C T EMS_canonical_SNV CDS_variant 3 A6,A8,C76
Chr8:779631 G A EMS_canonical_SNV CDS_variant 3 A15,B122,B127
Chr8:779671 G A EMS_canonical_SNV CDS_variant 2 B122,B127
Chr8:779688 C T EMS_canonical_SNV CDS_variant 1 B10
Chr8:779721 G A EMS_canonical_SNV CDS_variant 5 A10,B125,C61,C70,C79
Chr8:779760 G A EMS_canonical_SNV CDS_variant 5 C35,C37,C47,C64,C66
Chr8:779787 G A EMS_canonical_SNV CDS_variant 1 C78
Chr8:779807 C T EMS_canonical_SNV CDS_variant 2 A11,B87
Chr8:779817 G A EMS_canonical_SNV CDS_variant 2 A11,B87
Chr8:779879 C T EMS_canonical_SNV CDS_variant 2 C57,C61
Chr8:779924 G A EMS_canonical_SNV CDS_variant 3 A18,B62,C51

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781343.1
600 aa
N
1
300
600
PPR_3
PPR_3
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_long
TPR_24
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_1
PPR_2
PPR
TPR_24
PPR_1
PPR_2
PPR
PPR
C
PF13812 PPR_3 55-87 aa PF13812 PPR_3 63-121 aa PF13041 PPR_2 74-122 aa PF01535 PPR 78-107 aa PF12854 PPR_1 140-170 aa PF13041 PPR_2 144-194 aa PF01535 PPR 148-176 aa PF01535 PPR 187-211 aa PF13812 PPR_3 204-260 aa PF12854 PPR_1 213-243 aa PF13041 PPR_2 215-264 aa PF01535 PPR 219-248 aa PF12854 PPR_1 246-279 aa PF13041 PPR_2 251-299 aa PF01535 PPR 253-283 aa PF13812 PPR_3 274-329 aa PF17177 PPR_long 277-373 aa PF23276 TPR_24 278-376 aa PF12854 PPR_1 282-314 aa PF13041 PPR_2 286-333 aa PF01535 PPR 288-318 aa PF13812 PPR_3 309-367 aa PF12854 PPR_1 316-349 aa PF13041 PPR_2 320-369 aa PF01535 PPR 323-353 aa PF12854 PPR_1 351-376 aa PF13041 PPR_2 355-403 aa PF01535 PPR 358-387 aa PF12854 PPR_1 386-419 aa PF13041 PPR_2 391-439 aa PF01535 PPR 394-422 aa PF13812 PPR_3 413-470 aa PF12854 PPR_1 423-451 aa PF13041 PPR_2 427-474 aa PF01535 PPR 428-458 aa PF17177 PPR_long 451-572 aa PF12854 PPR_1 456-487 aa PF13041 PPR_2 460-497 aa PF01535 PPR 463-493 aa PF23276 TPR_24 468-576 aa PF12854 PPR_1 492-524 aa PF13041 PPR_2 495-542 aa PF01535 PPR 499-528 aa PF01535 PPR 533-561 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057781343.1 Pfam PF13812 PPR_3 Repeat 55 87 5e-62 206.6 Pentatricopeptide repeat domain
XP_057781343.1 Pfam PF13812 PPR_3 Repeat 63 121 5e-62 206.6 Pentatricopeptide repeat domain
XP_057781343.1 Pfam PF13041 PPR_2 Repeat 74 122 6.9e-154 500.6 PPR repeat family
XP_057781343.1 Pfam PF01535 PPR Repeat 78 107 3.3e-88 284.7 PPR repeat
XP_057781343.1 Pfam PF12854 PPR_1 Repeat 140 170 1.7e-116 380.2 PPR repeat
XP_057781343.1 Pfam PF13041 PPR_2 Repeat 144 194 6.9e-154 500.6 PPR repeat family
XP_057781343.1 Pfam PF01535 PPR Repeat 148 176 3.3e-88 284.7 PPR repeat
XP_057781343.1 Pfam PF01535 PPR Repeat 187 211 3.3e-88 284.7 PPR repeat
XP_057781343.1 Pfam PF13812 PPR_3 Repeat 204 260 5e-62 206.6 Pentatricopeptide repeat domain
XP_057781343.1 Pfam PF12854 PPR_1 Repeat 213 243 1.7e-116 380.2 PPR repeat
XP_057781343.1 Pfam PF13041 PPR_2 Repeat 215 264 6.9e-154 500.6 PPR repeat family
XP_057781343.1 Pfam PF01535 PPR Repeat 219 248 3.3e-88 284.7 PPR repeat
XP_057781343.1 Pfam PF12854 PPR_1 Repeat 246 279 1.7e-116 380.2 PPR repeat
XP_057781343.1 Pfam PF13041 PPR_2 Repeat 251 299 6.9e-154 500.6 PPR repeat family
XP_057781343.1 Pfam PF01535 PPR Repeat 253 283 3.3e-88 284.7 PPR repeat
XP_057781343.1 Pfam PF13812 PPR_3 Repeat 274 329 5e-62 206.6 Pentatricopeptide repeat domain
XP_057781343.1 Pfam PF17177 PPR_long Repeat 277 373 2.4e-33 116.0 Pentacotripeptide-repeat region of PRORP
XP_057781343.1 Pfam PF23276 TPR_24 Repeat 278 376 4.3e-35 121.2 Pentatricopeptide repeat-containing protein
XP_057781343.1 Pfam PF12854 PPR_1 Repeat 282 314 1.7e-116 380.2 PPR repeat
XP_057781343.1 Pfam PF13041 PPR_2 Repeat 286 333 6.9e-154 500.6 PPR repeat family
XP_057781343.1 Pfam PF01535 PPR Repeat 288 318 3.3e-88 284.7 PPR repeat
XP_057781343.1 Pfam PF13812 PPR_3 Repeat 309 367 5e-62 206.6 Pentatricopeptide repeat domain
XP_057781343.1 Pfam PF12854 PPR_1 Repeat 316 349 1.7e-116 380.2 PPR repeat
XP_057781343.1 Pfam PF13041 PPR_2 Repeat 320 369 6.9e-154 500.6 PPR repeat family
XP_057781343.1 Pfam PF01535 PPR Repeat 323 353 3.3e-88 284.7 PPR repeat
XP_057781343.1 Pfam PF12854 PPR_1 Repeat 351 376 1.7e-116 380.2 PPR repeat
XP_057781343.1 Pfam PF13041 PPR_2 Repeat 355 403 6.9e-154 500.6 PPR repeat family
XP_057781343.1 Pfam PF01535 PPR Repeat 358 387 3.3e-88 284.7 PPR repeat
XP_057781343.1 Pfam PF12854 PPR_1 Repeat 386 419 1.7e-116 380.2 PPR repeat
XP_057781343.1 Pfam PF13041 PPR_2 Repeat 391 439 6.9e-154 500.6 PPR repeat family
XP_057781343.1 Pfam PF01535 PPR Repeat 394 422 3.3e-88 284.7 PPR repeat
XP_057781343.1 Pfam PF13812 PPR_3 Repeat 413 470 5e-62 206.6 Pentatricopeptide repeat domain
XP_057781343.1 Pfam PF12854 PPR_1 Repeat 423 451 1.7e-116 380.2 PPR repeat
XP_057781343.1 Pfam PF13041 PPR_2 Repeat 427 474 6.9e-154 500.6 PPR repeat family
XP_057781343.1 Pfam PF01535 PPR Repeat 428 458 3.3e-88 284.7 PPR repeat
XP_057781343.1 Pfam PF17177 PPR_long Repeat 451 572 2.4e-33 116.0 Pentacotripeptide-repeat region of PRORP
XP_057781343.1 Pfam PF12854 PPR_1 Repeat 456 487 1.7e-116 380.2 PPR repeat
XP_057781343.1 Pfam PF13041 PPR_2 Repeat 460 497 6.9e-154 500.6 PPR repeat family
XP_057781343.1 Pfam PF01535 PPR Repeat 463 493 3.3e-88 284.7 PPR repeat
XP_057781343.1 Pfam PF23276 TPR_24 Repeat 468 576 4.3e-35 121.2 Pentatricopeptide repeat-containing protein
XP_057781343.1 Pfam PF12854 PPR_1 Repeat 492 524 1.7e-116 380.2 PPR repeat
XP_057781343.1 Pfam PF13041 PPR_2 Repeat 495 542 6.9e-154 500.6 PPR repeat family
XP_057781343.1 Pfam PF01535 PPR Repeat 499 528 3.3e-88 284.7 PPR repeat
XP_057781343.1 Pfam PF01535 PPR Repeat 533 561 3.3e-88 284.7 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057925360.1
CCCTTTTTTCTGCGATTAACGATGATGAGCAGAAGAGCTGCTGTTTCTGCAATCGATCTCATTCATGGAAGAGGATTTCTCAATCAATGGTCGCATAAATCGGGTATTATCTCTCCTCCATTCTCTCTCTTCTCTTCCAAGGCTTTTCAACCTAAGCAGCCCAGAATCGATTTCAGCTGTATTAAAGAATTAAATGATGCTATTGGAGTGTTTCAAAAAATGAAGAGTATGCAGCCGGAGCCTTCTGTTCTAATGTACAA...

CDS

1 records

下载 CDS FASTA
LOC130999743
ATGATGAGCAGAAGAGCTGCTGTTTCTGCAATCGATCTCATTCATGGAAGAGGATTTCTCAATCAATGGTCGCATAAATCGGGTATTATCTCTCCTCCATTCTCTCTCTTCTCTTCCAAGGCTTTTCAACCTAAGCAGCCCAGAATCGATTTCAGCTGTATTAAAGAATTAAATGATGCTATTGGAGTGTTTCAAAAAATGAAGAGTATGCAGCCGGAGCCTTCTGTTCTAATGTACAACAATCTTTTGAGTGTCACTGT...

Protein

1 records

下载 Protein FASTA
XP_057781343.1
MMSRRAAVSAIDLIHGRGFLNQWSHKSGIISPPFSLFSSKAFQPKQPRIDFSCIKELNDAIGVFQKMKSMQPEPSVLMYNNLLSVTVKIEQYSFALYMFDEMLRMGVPVNVYTMNIAVNCCCLLKDIKSGFAVMGIFFKRGYEPDVATFTTLIKGLFLNHKVAEAGKLFNMLLRFRICEPNDFMIVTMVDGLCKSGNVLPARDLVRRLERSRLRPNVKAYNALLDGLRKSGMVDDALQLLSAMIEKGITPDVVTYSSMIQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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