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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G000125

染色体: Chr08 坐标: 783931-786059 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G000125
名称SmilChr08G000125
描述pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向783931 - 786059 / +

ID 对照

NCBI Gene IDLOC130999748
GeneID130999748
locus_tag-
NCBI NameLOC130999748
原始查询LOC130999748

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like
产物pentatricopeptide repeat-containing protein At1g12300%2C mitochondrial-like
ArabidopsisAT1G12300 (AT1G12300)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837784]
identity=36.2; qcov=0.98; evalue=2.1e-125; confidence=medium
RiceOs10g0495200 (Rf4)
-
identity=31.6; qcov=0.87; evalue=2.13e-85; confidence=low
GOGO:0005515 (protein binding); GO:0009507 (chloroplast)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130999748

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057781349.1
2 Chloroplast 叶绿体 0.20000 XP_057781349.1
3 Nucleus 细胞核 0.00000 XP_057781349.1
4 Chromosome 染色体 0.00000 XP_057781349.1
5 Centromere 着丝粒 0.00000 XP_057781349.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:784033 C T EMS_canonical_SNV CDS_variant 3 B36,C10,C72
Chr8:784133 C T EMS_canonical_SNV CDS_variant 3 B23,B67,B99
Chr8:784170 C T EMS_canonical_SNV CDS_variant 1 B81
Chr8:784172 C T EMS_canonical_SNV CDS_variant 1 B36
Chr8:784246 C T EMS_canonical_SNV CDS_variant 5 B114,B115,B47,B85,C72
Chr8:784257 G A EMS_canonical_SNV CDS_variant 1 B93
Chr8:784280 G A EMS_canonical_SNV CDS_variant 2 B112,B124
Chr8:784518 G A EMS_canonical_SNV CDS_variant 2 B67,D4
Chr8:784521 G A EMS_canonical_SNV CDS_variant 3 B36,B71,C62
Chr8:784605 C T EMS_canonical_SNV CDS_variant 4 A21,C21,C71,C87
Chr8:784676 C T EMS_canonical_SNV CDS_variant 3 A20,B36,C87
Chr8:784687 C T EMS_canonical_SNV CDS_variant 2 B47,C72

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781349.1
601 aa
N
1
300
601
PPR_3
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR
C
PF13812 PPR_3 64-122 aa PF13041 PPR_2 75-123 aa PF01535 PPR 79-108 aa PF12854 PPR_1 141-171 aa PF13041 PPR_2 145-195 aa PF01535 PPR 149-177 aa PF01535 PPR 188-212 aa PF13812 PPR_3 205-261 aa PF12854 PPR_1 214-244 aa PF13041 PPR_2 216-265 aa PF01535 PPR 220-249 aa PF12854 PPR_1 247-279 aa PF13041 PPR_2 251-300 aa PF01535 PPR 254-284 aa PF13812 PPR_3 275-331 aa PF12854 PPR_1 283-315 aa PF13041 PPR_2 287-334 aa PF01535 PPR 289-319 aa PF13812 PPR_3 310-368 aa PF12854 PPR_1 317-350 aa PF13041 PPR_2 321-370 aa PF01535 PPR 324-354 aa PF23276 TPR_24 325-419 aa PF12854 PPR_1 352-377 aa PF13041 PPR_2 356-403 aa PF01535 PPR 359-388 aa PF12854 PPR_1 387-420 aa PF13041 PPR_2 392-438 aa PF01535 PPR 395-423 aa PF17177 PPR_long 412-574 aa PF13812 PPR_3 414-471 aa PF12854 PPR_1 423-452 aa PF01535 PPR 429-459 aa PF13041 PPR_2 433-475 aa PF12854 PPR_1 457-488 aa PF13041 PPR_2 461-498 aa PF01535 PPR 464-494 aa PF13812 PPR_3 485-539 aa PF13041 PPR_2 500-543 aa PF01535 PPR 501-529 aa PF01535 PPR 534-564 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057781349.1 Pfam PF13812 PPR_3 Repeat 64 122 1.3e-64 214.9 Pentatricopeptide repeat domain
XP_057781349.1 Pfam PF13041 PPR_2 Repeat 75 123 1.7e-146 477.0 PPR repeat family
XP_057781349.1 Pfam PF01535 PPR Repeat 79 108 1.6e-86 279.4 PPR repeat
XP_057781349.1 Pfam PF12854 PPR_1 Repeat 141 171 2.8e-110 360.4 PPR repeat
XP_057781349.1 Pfam PF13041 PPR_2 Repeat 145 195 1.7e-146 477.0 PPR repeat family
XP_057781349.1 Pfam PF01535 PPR Repeat 149 177 1.6e-86 279.4 PPR repeat
XP_057781349.1 Pfam PF01535 PPR Repeat 188 212 1.6e-86 279.4 PPR repeat
XP_057781349.1 Pfam PF13812 PPR_3 Repeat 205 261 1.3e-64 214.9 Pentatricopeptide repeat domain
XP_057781349.1 Pfam PF12854 PPR_1 Repeat 214 244 2.8e-110 360.4 PPR repeat
XP_057781349.1 Pfam PF13041 PPR_2 Repeat 216 265 1.7e-146 477.0 PPR repeat family
XP_057781349.1 Pfam PF01535 PPR Repeat 220 249 1.6e-86 279.4 PPR repeat
XP_057781349.1 Pfam PF12854 PPR_1 Repeat 247 279 2.8e-110 360.4 PPR repeat
XP_057781349.1 Pfam PF13041 PPR_2 Repeat 251 300 1.7e-146 477.0 PPR repeat family
XP_057781349.1 Pfam PF01535 PPR Repeat 254 284 1.6e-86 279.4 PPR repeat
XP_057781349.1 Pfam PF13812 PPR_3 Repeat 275 331 1.3e-64 214.9 Pentatricopeptide repeat domain
XP_057781349.1 Pfam PF12854 PPR_1 Repeat 283 315 2.8e-110 360.4 PPR repeat
XP_057781349.1 Pfam PF13041 PPR_2 Repeat 287 334 1.7e-146 477.0 PPR repeat family
XP_057781349.1 Pfam PF01535 PPR Repeat 289 319 1.6e-86 279.4 PPR repeat
XP_057781349.1 Pfam PF13812 PPR_3 Repeat 310 368 1.3e-64 214.9 Pentatricopeptide repeat domain
XP_057781349.1 Pfam PF12854 PPR_1 Repeat 317 350 2.8e-110 360.4 PPR repeat
XP_057781349.1 Pfam PF13041 PPR_2 Repeat 321 370 1.7e-146 477.0 PPR repeat family
XP_057781349.1 Pfam PF01535 PPR Repeat 324 354 1.6e-86 279.4 PPR repeat
XP_057781349.1 Pfam PF23276 TPR_24 Repeat 325 419 3.2e-34 118.4 Pentatricopeptide repeat-containing protein
XP_057781349.1 Pfam PF12854 PPR_1 Repeat 352 377 2.8e-110 360.4 PPR repeat
XP_057781349.1 Pfam PF13041 PPR_2 Repeat 356 403 1.7e-146 477.0 PPR repeat family
XP_057781349.1 Pfam PF01535 PPR Repeat 359 388 1.6e-86 279.4 PPR repeat
XP_057781349.1 Pfam PF12854 PPR_1 Repeat 387 420 2.8e-110 360.4 PPR repeat
XP_057781349.1 Pfam PF13041 PPR_2 Repeat 392 438 1.7e-146 477.0 PPR repeat family
XP_057781349.1 Pfam PF01535 PPR Repeat 395 423 1.6e-86 279.4 PPR repeat
XP_057781349.1 Pfam PF17177 PPR_long Repeat 412 574 1.5e-29 103.6 Pentacotripeptide-repeat region of PRORP
XP_057781349.1 Pfam PF13812 PPR_3 Repeat 414 471 1.3e-64 214.9 Pentatricopeptide repeat domain
XP_057781349.1 Pfam PF12854 PPR_1 Repeat 423 452 2.8e-110 360.4 PPR repeat
XP_057781349.1 Pfam PF01535 PPR Repeat 429 459 1.6e-86 279.4 PPR repeat
XP_057781349.1 Pfam PF13041 PPR_2 Repeat 433 475 1.7e-146 477.0 PPR repeat family
XP_057781349.1 Pfam PF12854 PPR_1 Repeat 457 488 2.8e-110 360.4 PPR repeat
XP_057781349.1 Pfam PF13041 PPR_2 Repeat 461 498 1.7e-146 477.0 PPR repeat family
XP_057781349.1 Pfam PF01535 PPR Repeat 464 494 1.6e-86 279.4 PPR repeat
XP_057781349.1 Pfam PF13812 PPR_3 Repeat 485 539 1.3e-64 214.9 Pentatricopeptide repeat domain
XP_057781349.1 Pfam PF13041 PPR_2 Repeat 500 543 1.7e-146 477.0 PPR repeat family
XP_057781349.1 Pfam PF01535 PPR Repeat 501 529 1.6e-86 279.4 PPR repeat
XP_057781349.1 Pfam PF01535 PPR Repeat 534 564 1.6e-86 279.4 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057925366.1
ATTTCAACCCTTTTTTCAGATTCTCAATCACAACTACTCTCGCAAGCGTCGCCCAACACTCTCCCTTTCTTCACATTAAATCTCACCGCCGATTAAGGATGACGAGCAGAAGAGCTGCTGTTTTTGCAATCGACCTCATTCATCATGGAAGAGGATTTCTCAATCAATGGTCGCATAAATCGGGTATTATCTCTCCTCCATTCTCTCTCTTCTCTTCCAAGGCTTTTCAACCTAAGCAGCCCAGAATCGATTTCAGCTGT...

CDS

1 records

下载 CDS FASTA
LOC130999748
ATGACGAGCAGAAGAGCTGCTGTTTTTGCAATCGACCTCATTCATCATGGAAGAGGATTTCTCAATCAATGGTCGCATAAATCGGGTATTATCTCTCCTCCATTCTCTCTCTTCTCTTCCAAGGCTTTTCAACCTAAGCAGCCCAGAATCGATTTCAGCTGTGTTAAAGAATTAAATGATGCTATTGGAGTGTTTCAAAAAATGAACAGTATGCAGCCGGAGCCTTCTGTTCTAATGTACAACAATCTTTTGAGTGTCAC...

Protein

1 records

下载 Protein FASTA
XP_057781349.1
MTSRRAAVFAIDLIHHGRGFLNQWSHKSGIISPPFSLFSSKAFQPKQPRIDFSCVKELNDAIGVFQKMNSMQPEPSVLMYNNLLSVTVKIEQYSFALYMFDEMLRMGVPVNVYTMNIAVNCCCLLKDIKSGFAVMGIFFKRGYEPDVATFTTLIKGLFLNHKVAEAGKLFNMLLRFRICEPNDVMIVTMVDGLCKSGNVLPARDLVRRLERSRLRPNVKAYNALLDGLRKSGMVDDALQLLSTMIEKDITPDVVTYNSMI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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