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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G000126

染色体: Chr08 坐标: 788944-791086 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G000126
名称SmilChr08G000126
描述pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向788944 - 791086 / +

ID 对照

NCBI Gene IDLOC130999750
GeneID130999750
locus_tag-
NCBI NameLOC130999750
原始查询LOC130999750

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like
产物pentatricopeptide repeat-containing protein At1g12300%2C mitochondrial-like
ArabidopsisAT1G12300 (AT1G12300)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837784]
identity=36.8; qcov=0.982; evalue=1.57e-129; confidence=medium
RiceOs10g0495200 (Rf4)
-
identity=31.7; qcov=0.872; evalue=2.04e-88; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130999750

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057781350.1
2 Chloroplast 叶绿体 0.20000 XP_057781350.1
3 Nucleus 细胞核 0.00000 XP_057781350.1
4 Chromosome 染色体 0.00000 XP_057781350.1
5 Centromere 着丝粒 0.00000 XP_057781350.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:789100 C T EMS_canonical_SNV CDS_variant 1 C8
Chr8:789190 G A EMS_canonical_SNV CDS_variant 2 B117,B92
Chr8:789258 G A EMS_canonical_SNV CDS_variant 1 B122
Chr8:789261 G A EMS_canonical_SNV CDS_variant 2 B107,B77
Chr8:789361 G A EMS_canonical_SNV CDS_variant 4 B114,B26,B63,C73
Chr8:789392 C T EMS_canonical_SNV CDS_variant 2 B105,C63
Chr8:789432 C T EMS_canonical_SNV CDS_variant 2 B42,B43
Chr8:789439 G A EMS_canonical_SNV CDS_variant 3 B66,B7,C25
Chr8:789444 G A EMS_canonical_SNV CDS_variant 3 B66,B7,C25
Chr8:789489 C T EMS_canonical_SNV CDS_variant 1 B93
Chr8:789494 CTT C 2bp_deletion frameshift_variant 1 D1
Chr8:789494 CTT C 2bp_deletion CDS_variant 1 D1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781350.1
600 aa
N
1
300
600
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_long
TPR_24
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_1
PPR_3
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_long
PPR_1
PPR_2
PPR
TPR_24
PPR_1
PPR_2
PPR
PPR
C
PF13041 PPR_2 74-122 aa PF01535 PPR 78-107 aa PF13812 PPR_3 99-154 aa PF12854 PPR_1 140-171 aa PF01535 PPR 148-177 aa PF01535 PPR 187-211 aa PF13812 PPR_3 204-260 aa PF12854 PPR_1 213-243 aa PF13041 PPR_2 215-264 aa PF01535 PPR 219-248 aa PF12854 PPR_1 246-278 aa PF13041 PPR_2 250-299 aa PF01535 PPR 253-282 aa PF13812 PPR_3 274-330 aa PF17177 PPR_long 275-375 aa PF23276 TPR_24 278-376 aa PF12854 PPR_1 282-314 aa PF13041 PPR_2 286-333 aa PF01535 PPR 288-318 aa PF13812 PPR_3 309-367 aa PF12854 PPR_1 316-349 aa PF13041 PPR_2 320-360 aa PF01535 PPR 323-352 aa PF12854 PPR_1 352-376 aa PF13041 PPR_2 355-403 aa PF01535 PPR 358-387 aa PF12854 PPR_1 386-419 aa PF13812 PPR_3 386-435 aa PF13041 PPR_2 391-439 aa PF01535 PPR 394-422 aa PF13812 PPR_3 413-471 aa PF12854 PPR_1 423-451 aa PF13041 PPR_2 426-474 aa PF01535 PPR 428-458 aa PF13812 PPR_3 450-507 aa PF17177 PPR_long 451-569 aa PF12854 PPR_1 456-487 aa PF13041 PPR_2 460-497 aa PF01535 PPR 463-493 aa PF23276 TPR_24 473-576 aa PF12854 PPR_1 491-524 aa PF13041 PPR_2 495-542 aa PF01535 PPR 499-528 aa PF01535 PPR 533-561 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057781350.1 Pfam PF13041 PPR_2 Repeat 74 122 1.3e-149 486.9 PPR repeat family
XP_057781350.1 Pfam PF01535 PPR Repeat 78 107 2.9e-88 284.8 PPR repeat
XP_057781350.1 Pfam PF13812 PPR_3 Repeat 99 154 5.2e-63 209.7 Pentatricopeptide repeat domain
XP_057781350.1 Pfam PF12854 PPR_1 Repeat 140 171 2.8e-115 376.4 PPR repeat
XP_057781350.1 Pfam PF01535 PPR Repeat 148 177 2.9e-88 284.8 PPR repeat
XP_057781350.1 Pfam PF01535 PPR Repeat 187 211 2.9e-88 284.8 PPR repeat
XP_057781350.1 Pfam PF13812 PPR_3 Repeat 204 260 5.2e-63 209.7 Pentatricopeptide repeat domain
XP_057781350.1 Pfam PF12854 PPR_1 Repeat 213 243 2.8e-115 376.4 PPR repeat
XP_057781350.1 Pfam PF13041 PPR_2 Repeat 215 264 1.3e-149 486.9 PPR repeat family
XP_057781350.1 Pfam PF01535 PPR Repeat 219 248 2.9e-88 284.8 PPR repeat
XP_057781350.1 Pfam PF12854 PPR_1 Repeat 246 278 2.8e-115 376.4 PPR repeat
XP_057781350.1 Pfam PF13041 PPR_2 Repeat 250 299 1.3e-149 486.9 PPR repeat family
XP_057781350.1 Pfam PF01535 PPR Repeat 253 282 2.9e-88 284.8 PPR repeat
XP_057781350.1 Pfam PF13812 PPR_3 Repeat 274 330 5.2e-63 209.7 Pentatricopeptide repeat domain
XP_057781350.1 Pfam PF17177 PPR_long Repeat 275 375 9.4e-33 114.1 Pentacotripeptide-repeat region of PRORP
XP_057781350.1 Pfam PF23276 TPR_24 Repeat 278 376 9.6e-34 116.9 Pentatricopeptide repeat-containing protein
XP_057781350.1 Pfam PF12854 PPR_1 Repeat 282 314 2.8e-115 376.4 PPR repeat
XP_057781350.1 Pfam PF13041 PPR_2 Repeat 286 333 1.3e-149 486.9 PPR repeat family
XP_057781350.1 Pfam PF01535 PPR Repeat 288 318 2.9e-88 284.8 PPR repeat
XP_057781350.1 Pfam PF13812 PPR_3 Repeat 309 367 5.2e-63 209.7 Pentatricopeptide repeat domain
XP_057781350.1 Pfam PF12854 PPR_1 Repeat 316 349 2.8e-115 376.4 PPR repeat
XP_057781350.1 Pfam PF13041 PPR_2 Repeat 320 360 1.3e-149 486.9 PPR repeat family
XP_057781350.1 Pfam PF01535 PPR Repeat 323 352 2.9e-88 284.8 PPR repeat
XP_057781350.1 Pfam PF12854 PPR_1 Repeat 352 376 2.8e-115 376.4 PPR repeat
XP_057781350.1 Pfam PF13041 PPR_2 Repeat 355 403 1.3e-149 486.9 PPR repeat family
XP_057781350.1 Pfam PF01535 PPR Repeat 358 387 2.9e-88 284.8 PPR repeat
XP_057781350.1 Pfam PF12854 PPR_1 Repeat 386 419 2.8e-115 376.4 PPR repeat
XP_057781350.1 Pfam PF13812 PPR_3 Repeat 386 435 5.2e-63 209.7 Pentatricopeptide repeat domain
XP_057781350.1 Pfam PF13041 PPR_2 Repeat 391 439 1.3e-149 486.9 PPR repeat family
XP_057781350.1 Pfam PF01535 PPR Repeat 394 422 2.9e-88 284.8 PPR repeat
XP_057781350.1 Pfam PF13812 PPR_3 Repeat 413 471 5.2e-63 209.7 Pentatricopeptide repeat domain
XP_057781350.1 Pfam PF12854 PPR_1 Repeat 423 451 2.8e-115 376.4 PPR repeat
XP_057781350.1 Pfam PF13041 PPR_2 Repeat 426 474 1.3e-149 486.9 PPR repeat family
XP_057781350.1 Pfam PF01535 PPR Repeat 428 458 2.9e-88 284.8 PPR repeat
XP_057781350.1 Pfam PF13812 PPR_3 Repeat 450 507 5.2e-63 209.7 Pentatricopeptide repeat domain
XP_057781350.1 Pfam PF17177 PPR_long Repeat 451 569 9.4e-33 114.1 Pentacotripeptide-repeat region of PRORP
XP_057781350.1 Pfam PF12854 PPR_1 Repeat 456 487 2.8e-115 376.4 PPR repeat
XP_057781350.1 Pfam PF13041 PPR_2 Repeat 460 497 1.3e-149 486.9 PPR repeat family
XP_057781350.1 Pfam PF01535 PPR Repeat 463 493 2.9e-88 284.8 PPR repeat
XP_057781350.1 Pfam PF23276 TPR_24 Repeat 473 576 9.6e-34 116.9 Pentatricopeptide repeat-containing protein
XP_057781350.1 Pfam PF12854 PPR_1 Repeat 491 524 2.8e-115 376.4 PPR repeat
XP_057781350.1 Pfam PF13041 PPR_2 Repeat 495 542 1.3e-149 486.9 PPR repeat family
XP_057781350.1 Pfam PF01535 PPR Repeat 499 528 2.9e-88 284.8 PPR repeat
XP_057781350.1 Pfam PF01535 PPR Repeat 533 561 2.9e-88 284.8 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057925367.1
ATTTCAACCCTTTTTTCAGATTCAATCACAACTCCTAATCTCGCAAGCGTCGCCCAACACTCTCCCTTTCATCACATTAAATCTCACCGCCGATTAAGGATGATGAGCAGAAGGGCAGCTGTTTTTGCAATCGATGTCATTCATGGAAGACGATTTCTCAATAGATGGTCGCAGAAATCGGGTATTCTCTCTCCTCCATTCTCTCACTTCTCTTCCAAGGCTTTTCAACCTAAGCAGCCCAGAATCGATTTCAGCTGTGT...

CDS

1 records

下载 CDS FASTA
LOC130999750
ATGATGAGCAGAAGGGCAGCTGTTTTTGCAATCGATGTCATTCATGGAAGACGATTTCTCAATAGATGGTCGCAGAAATCGGGTATTCTCTCTCCTCCATTCTCTCACTTCTCTTCCAAGGCTTTTCAACCTAAGCAGCCCAGAATCGATTTCAGCTGTGTTAAAGAATTAAATGATGCTATTGGATTGTTTCAAAAAATGAAGAGTATGCAGCCGGAGCCTTCTGTTCGAATGTACAACAGTCTTTTGAGTGTCACTGT...

Protein

1 records

下载 Protein FASTA
XP_057781350.1
MMSRRAAVFAIDVIHGRRFLNRWSQKSGILSPPFSHFSSKAFQPKQPRIDFSCVKELNDAIGLFQKMKSMQPEPSVRMYNSLLSVTVKIEQYSFALYMFDEMLRMGVPVNVYTMTIAVNCCCLLKDIKSGFAVMGLFFKRGYEPNVATFTTLIKGLFLDHKVVEAGKLFNKILRFGICEPNDVMILTMVDGLCKSGNVLPARDLVRRLERSRLRPNVKAYNALLDGLRKSGMVDDALQLLSAMIEKGITPNVVTYSSMIQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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