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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G000128

染色体: Chr08 坐标: 802312-804383 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G000128
名称SmilChr08G000128
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向802312 - 804383 / +

ID 对照

NCBI Gene IDLOC130999753
GeneID130999753
locus_tag-
NCBI NameLOC130999753
原始查询LOC130999753

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
产物putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial
ArabidopsisAT1G12700 (RPF1)
RNA processing FACTOR [Source:NCBI gene (formerly Entrezgene);Acc:837825]
identity=35.8; qcov=0.888; evalue=8.99e-124; confidence=medium
RiceOs10g0495200 (Rf4)
-
identity=32.5; qcov=0.872; evalue=1.52e-92; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130999753

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057781356.1
2 Chloroplast 叶绿体 0.20000 XP_057781356.1
3 Nucleus 细胞核 0.00000 XP_057781356.1
4 Chromosome 染色体 0.00000 XP_057781356.1
5 Centromere 着丝粒 0.00000 XP_057781356.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:802364 G A EMS_canonical_SNV CDS_variant 2 B102,C34
Chr8:802365 C T EMS_canonical_SNV CDS_variant 1 B64
Chr8:802432 T TAA 2bp_insertion frameshift_variant 3 B102,B5,B54
Chr8:802432 T TAA 2bp_insertion CDS_variant 3 B102,B5,B54
Chr8:802582 C T EMS_canonical_SNV CDS_variant 2 B56,B96
Chr8:802742 G A EMS_canonical_SNV CDS_variant 1 C7
Chr8:802781 G A EMS_canonical_SNV CDS_variant 3 B58,C27,D9
Chr8:802839 C T EMS_canonical_SNV CDS_variant 2 B58,D9
Chr8:802866 G A EMS_canonical_SNV CDS_variant 4 B58,B87,C39,D9
Chr8:802872 G A EMS_canonical_SNV CDS_variant 2 B114,C47
Chr8:802882 G A EMS_canonical_SNV CDS_variant 3 A8,B115,C59
Chr8:803020 C T EMS_canonical_SNV CDS_variant 3 A14,B108,B112

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781356.1
600 aa
N
1
300
600
PPR_3
PPR_2
PPR
PPR_1
PPR
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_long
TPR_24
PPR_1
PPR_2
PPR
TPR_24
PPR_1
PPR_2
PPR
PPR_3
PPR_3
PPR_1
PPR_2
PPR
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR
C
PF13812 PPR_3 54-87 aa PF13041 PPR_2 74-122 aa PF01535 PPR 78-107 aa PF12854 PPR_1 140-170 aa PF01535 PPR 148-176 aa PF01535 PPR 187-211 aa PF23276 TPR_24 201-306 aa PF13812 PPR_3 204-260 aa PF12854 PPR_1 213-243 aa PF13041 PPR_2 215-264 aa PF01535 PPR 219-248 aa PF12854 PPR_1 246-278 aa PF13041 PPR_2 250-299 aa PF01535 PPR 253-282 aa PF13812 PPR_3 274-332 aa PF17177 PPR_long 276-374 aa PF23276 TPR_24 278-328 aa PF12854 PPR_1 282-314 aa PF13041 PPR_2 286-326 aa PF01535 PPR 288-318 aa PF23276 TPR_24 306-417 aa PF12854 PPR_1 316-349 aa PF13041 PPR_2 320-363 aa PF01535 PPR 323-353 aa PF13812 PPR_3 332-367 aa PF13812 PPR_3 344-399 aa PF12854 PPR_1 351-377 aa PF13041 PPR_2 355-403 aa PF01535 PPR 358-387 aa PF13041 PPR_2 391-439 aa PF01535 PPR 394-422 aa PF13812 PPR_3 413-470 aa PF12854 PPR_1 423-451 aa PF01535 PPR 428-458 aa PF13041 PPR_2 432-474 aa PF12854 PPR_1 456-487 aa PF13041 PPR_2 460-509 aa PF01535 PPR 463-493 aa PF23276 TPR_24 468-575 aa PF13812 PPR_3 484-538 aa PF12854 PPR_1 491-524 aa PF13041 PPR_2 495-542 aa PF01535 PPR 499-528 aa PF01535 PPR 533-561 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057781356.1 Pfam PF13812 PPR_3 Repeat 54 87 1.7e-67 224.1 Pentatricopeptide repeat domain
XP_057781356.1 Pfam PF13041 PPR_2 Repeat 74 122 4e-146 475.8 PPR repeat family
XP_057781356.1 Pfam PF01535 PPR Repeat 78 107 9.1e-90 289.6 PPR repeat
XP_057781356.1 Pfam PF12854 PPR_1 Repeat 140 170 3.5e-117 382.5 PPR repeat
XP_057781356.1 Pfam PF01535 PPR Repeat 148 176 9.1e-90 289.6 PPR repeat
XP_057781356.1 Pfam PF01535 PPR Repeat 187 211 9.1e-90 289.6 PPR repeat
XP_057781356.1 Pfam PF23276 TPR_24 Repeat 201 306 1.2e-39 136.0 Pentatricopeptide repeat-containing protein
XP_057781356.1 Pfam PF13812 PPR_3 Repeat 204 260 1.7e-67 224.1 Pentatricopeptide repeat domain
XP_057781356.1 Pfam PF12854 PPR_1 Repeat 213 243 3.5e-117 382.5 PPR repeat
XP_057781356.1 Pfam PF13041 PPR_2 Repeat 215 264 4e-146 475.8 PPR repeat family
XP_057781356.1 Pfam PF01535 PPR Repeat 219 248 9.1e-90 289.6 PPR repeat
XP_057781356.1 Pfam PF12854 PPR_1 Repeat 246 278 3.5e-117 382.5 PPR repeat
XP_057781356.1 Pfam PF13041 PPR_2 Repeat 250 299 4e-146 475.8 PPR repeat family
XP_057781356.1 Pfam PF01535 PPR Repeat 253 282 9.1e-90 289.6 PPR repeat
XP_057781356.1 Pfam PF13812 PPR_3 Repeat 274 332 1.7e-67 224.1 Pentatricopeptide repeat domain
XP_057781356.1 Pfam PF17177 PPR_long Repeat 276 374 1.2e-32 113.7 Pentacotripeptide-repeat region of PRORP
XP_057781356.1 Pfam PF23276 TPR_24 Repeat 278 328 1.2e-39 136.0 Pentatricopeptide repeat-containing protein
XP_057781356.1 Pfam PF12854 PPR_1 Repeat 282 314 3.5e-117 382.5 PPR repeat
XP_057781356.1 Pfam PF13041 PPR_2 Repeat 286 326 4e-146 475.8 PPR repeat family
XP_057781356.1 Pfam PF01535 PPR Repeat 288 318 9.1e-90 289.6 PPR repeat
XP_057781356.1 Pfam PF23276 TPR_24 Repeat 306 417 1.2e-39 136.0 Pentatricopeptide repeat-containing protein
XP_057781356.1 Pfam PF12854 PPR_1 Repeat 316 349 3.5e-117 382.5 PPR repeat
XP_057781356.1 Pfam PF13041 PPR_2 Repeat 320 363 4e-146 475.8 PPR repeat family
XP_057781356.1 Pfam PF01535 PPR Repeat 323 353 9.1e-90 289.6 PPR repeat
XP_057781356.1 Pfam PF13812 PPR_3 Repeat 332 367 1.7e-67 224.1 Pentatricopeptide repeat domain
XP_057781356.1 Pfam PF13812 PPR_3 Repeat 344 399 1.7e-67 224.1 Pentatricopeptide repeat domain
XP_057781356.1 Pfam PF12854 PPR_1 Repeat 351 377 3.5e-117 382.5 PPR repeat
XP_057781356.1 Pfam PF13041 PPR_2 Repeat 355 403 4e-146 475.8 PPR repeat family
XP_057781356.1 Pfam PF01535 PPR Repeat 358 387 9.1e-90 289.6 PPR repeat
XP_057781356.1 Pfam PF13041 PPR_2 Repeat 391 439 4e-146 475.8 PPR repeat family
XP_057781356.1 Pfam PF01535 PPR Repeat 394 422 9.1e-90 289.6 PPR repeat
XP_057781356.1 Pfam PF13812 PPR_3 Repeat 413 470 1.7e-67 224.1 Pentatricopeptide repeat domain
XP_057781356.1 Pfam PF12854 PPR_1 Repeat 423 451 3.5e-117 382.5 PPR repeat
XP_057781356.1 Pfam PF01535 PPR Repeat 428 458 9.1e-90 289.6 PPR repeat
XP_057781356.1 Pfam PF13041 PPR_2 Repeat 432 474 4e-146 475.8 PPR repeat family
XP_057781356.1 Pfam PF12854 PPR_1 Repeat 456 487 3.5e-117 382.5 PPR repeat
XP_057781356.1 Pfam PF13041 PPR_2 Repeat 460 509 4e-146 475.8 PPR repeat family
XP_057781356.1 Pfam PF01535 PPR Repeat 463 493 9.1e-90 289.6 PPR repeat
XP_057781356.1 Pfam PF23276 TPR_24 Repeat 468 575 1.2e-39 136.0 Pentatricopeptide repeat-containing protein
XP_057781356.1 Pfam PF13812 PPR_3 Repeat 484 538 1.7e-67 224.1 Pentatricopeptide repeat domain
XP_057781356.1 Pfam PF12854 PPR_1 Repeat 491 524 3.5e-117 382.5 PPR repeat
XP_057781356.1 Pfam PF13041 PPR_2 Repeat 495 542 4e-146 475.8 PPR repeat family
XP_057781356.1 Pfam PF01535 PPR Repeat 499 528 9.1e-90 289.6 PPR repeat
XP_057781356.1 Pfam PF01535 PPR Repeat 533 561 9.1e-90 289.6 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057925373.1
GCAAGCGTCGCCCAAATCTCACTGCCGATTAAGGATGATGAGCAGAAGAGCTGCTGTTTCTGCAATCGATCTCATTCATGGAACAGGATTTCTCTATCGATGGTCGCATAAATCGGGTATTCTTTCTCCTCCATTCTCTCTCTTCTCTTCCAAGGCTTTTCAACCTAAGCAGCCCAGAATCGATTTCAGCTGTGTTAAAGAATTAAATGATGCTATTGGAGTGTTTCAAAAAATGAAGAGTATGCAGCCGGAGCCTTCTG...

CDS

1 records

下载 CDS FASTA
LOC130999753
ATGATGAGCAGAAGAGCTGCTGTTTCTGCAATCGATCTCATTCATGGAACAGGATTTCTCTATCGATGGTCGCATAAATCGGGTATTCTTTCTCCTCCATTCTCTCTCTTCTCTTCCAAGGCTTTTCAACCTAAGCAGCCCAGAATCGATTTCAGCTGTGTTAAAGAATTAAATGATGCTATTGGAGTGTTTCAAAAAATGAAGAGTATGCAGCCGGAGCCTTCTGTTCGAATGTACAACAGTCTTTTGAGTGTCACTGT...

Protein

1 records

下载 Protein FASTA
XP_057781356.1
MMSRRAAVSAIDLIHGTGFLYRWSHKSGILSPPFSLFSSKAFQPKQPRIDFSCVKELNDAIGVFQKMKSMQPEPSVRMYNSLLSVTVKIEQYSFALYMFDEMLRMGVPVNVYTMNIAVNCCCLLKDIKSGFAVMGIFFKRGYEPDVATFTTLIKGLFLNHKVAEAGKLFNMLLRFRICEPNDIMILTMVDGLCKSGNVLPARDLVRRLERSRLRPNVKAYNALLDGLRKSGMVDDALQLLSAMIEKGITPNVVTYNSMIQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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