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TF 结合位点 TF 靶基因 EMS 突变
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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G000130

染色体: Chr08 坐标: 813885-815933 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G000130
名称SmilChr08G000130
描述pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向813885 - 815933 / +

ID 对照

NCBI Gene IDLOC130999754
GeneID130999754
locus_tag-
NCBI NameLOC130999754
原始查询LOC130999754

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like
产物pentatricopeptide repeat-containing protein At1g12300%2C mitochondrial-like
ArabidopsisAT1G12300 (AT1G12300)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837784]
identity=40; qcov=0.891; evalue=6.3e-101; confidence=medium
RiceOs10g0495200 (Rf4)
-
identity=36; qcov=0.856; evalue=3.8e-80; confidence=medium
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130999754

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057781357.1
2 Chloroplast 叶绿体 0.20000 XP_057781357.1
3 Nucleus 细胞核 0.00000 XP_057781357.1
4 Chromosome 染色体 0.00000 XP_057781357.1
5 Centromere 着丝粒 0.00000 XP_057781357.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:813988 C T EMS_canonical_SNV CDS_variant 2 B137,B62
Chr8:814189 G A EMS_canonical_SNV CDS_variant 3 B137,B22,D8
Chr8:814232 G A EMS_canonical_SNV CDS_variant 1 C6
Chr8:814627 C T EMS_canonical_SNV CDS_variant 2 C67,D5
Chr8:814628 C T EMS_canonical_SNV CDS_variant 2 C67,D5
Chr8:814658 C T EMS_canonical_SNV CDS_variant 5 A2,B104,B123,C68,D4
Chr8:814667 C T EMS_canonical_SNV CDS_variant 2 B12,C55
Chr8:814692 C T EMS_canonical_SNV CDS_variant 3 A7,B110,B68
Chr8:814695 C T EMS_canonical_SNV stop_gained 1 B119
Chr8:814695 C T EMS_canonical_SNV CDS_variant 1 B119
Chr8:814701 C T EMS_canonical_SNV CDS_variant 3 B125,B67,D4
Chr8:814709 G A EMS_canonical_SNV CDS_variant 2 A7,B68

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781357.1
600 aa
N
1
300
600
PPR_3
PPR_2
PPR
PPR_1
PPR
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_long
TPR_24
PPR_1
PPR_2
PPR
TPR_24
PPR_1
PPR_2
PPR
PPR_3
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR
PPR_2
PPR
C
PF13812 PPR_3 54-87 aa PF13041 PPR_2 74-122 aa PF01535 PPR 78-107 aa PF12854 PPR_1 140-170 aa PF01535 PPR 148-176 aa PF01535 PPR 187-211 aa PF23276 TPR_24 201-306 aa PF13812 PPR_3 204-260 aa PF12854 PPR_1 213-243 aa PF13041 PPR_2 215-264 aa PF01535 PPR 219-248 aa PF12854 PPR_1 246-279 aa PF13041 PPR_2 250-299 aa PF01535 PPR 253-283 aa PF13812 PPR_3 274-332 aa PF17177 PPR_long 275-374 aa PF23276 TPR_24 278-329 aa PF12854 PPR_1 282-314 aa PF13041 PPR_2 286-333 aa PF01535 PPR 288-318 aa PF23276 TPR_24 306-417 aa PF12854 PPR_1 316-349 aa PF13041 PPR_2 320-369 aa PF01535 PPR 323-353 aa PF13812 PPR_3 331-367 aa PF13812 PPR_3 344-399 aa PF12854 PPR_1 351-376 aa PF13041 PPR_2 355-383 aa PF01535 PPR 358-386 aa PF12854 PPR_1 386-419 aa PF13041 PPR_2 391-439 aa PF01535 PPR 394-422 aa PF13812 PPR_3 413-470 aa PF12854 PPR_1 423-451 aa PF01535 PPR 428-458 aa PF13041 PPR_2 432-474 aa PF12854 PPR_1 456-487 aa PF13041 PPR_2 460-509 aa PF01535 PPR 463-493 aa PF23276 TPR_24 468-576 aa PF13812 PPR_3 484-538 aa PF12854 PPR_1 491-524 aa PF01535 PPR 499-528 aa PF13041 PPR_2 499-542 aa PF01535 PPR 533-563 aa
XP_057781358.1
432 aa
N
1
216
432
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_long
PPR_1
PPR_2
PPR
TPR_24
PPR_1
PPR_3
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR
C
PF23276 TPR_24 34-138 aa PF13812 PPR_3 36-92 aa PF12854 PPR_1 45-75 aa PF13041 PPR_2 47-96 aa PF01535 PPR 51-80 aa PF12854 PPR_1 78-111 aa PF13041 PPR_2 82-131 aa PF01535 PPR 85-115 aa PF13812 PPR_3 106-164 aa PF17177 PPR_long 109-207 aa PF12854 PPR_1 114-146 aa PF13041 PPR_2 118-165 aa PF01535 PPR 120-150 aa PF23276 TPR_24 142-249 aa PF12854 PPR_1 148-181 aa PF13812 PPR_3 148-199 aa PF13041 PPR_2 152-201 aa PF01535 PPR 155-185 aa PF13812 PPR_3 176-231 aa PF12854 PPR_1 183-208 aa PF13041 PPR_2 187-227 aa PF01535 PPR 190-218 aa PF12854 PPR_1 218-251 aa PF13041 PPR_2 223-271 aa PF01535 PPR 226-254 aa PF13812 PPR_3 245-302 aa PF12854 PPR_1 255-283 aa PF01535 PPR 260-290 aa PF13041 PPR_2 264-306 aa PF12854 PPR_1 288-319 aa PF13041 PPR_2 292-341 aa PF01535 PPR 295-325 aa PF23276 TPR_24 300-408 aa PF13812 PPR_3 316-370 aa PF12854 PPR_1 323-356 aa PF13041 PPR_2 327-374 aa PF01535 PPR 331-360 aa PF01535 PPR 365-395 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057781357.1 Pfam PF13812 PPR_3 Repeat 54 87 5.7e-68 225.6 Pentatricopeptide repeat domain
XP_057781357.1 Pfam PF13041 PPR_2 Repeat 74 122 5.2e-154 501.0 PPR repeat family
XP_057781357.1 Pfam PF01535 PPR Repeat 78 107 1.7e-91 295.0 PPR repeat
XP_057781357.1 Pfam PF12854 PPR_1 Repeat 140 170 6.9e-118 384.7 PPR repeat
XP_057781357.1 Pfam PF01535 PPR Repeat 148 176 1.7e-91 295.0 PPR repeat
XP_057781357.1 Pfam PF01535 PPR Repeat 187 211 1.7e-91 295.0 PPR repeat
XP_057781357.1 Pfam PF23276 TPR_24 Repeat 201 306 6.5e-39 133.6 Pentatricopeptide repeat-containing protein
XP_057781357.1 Pfam PF13812 PPR_3 Repeat 204 260 5.7e-68 225.6 Pentatricopeptide repeat domain
XP_057781357.1 Pfam PF12854 PPR_1 Repeat 213 243 6.9e-118 384.7 PPR repeat
XP_057781357.1 Pfam PF13041 PPR_2 Repeat 215 264 5.2e-154 501.0 PPR repeat family
XP_057781357.1 Pfam PF01535 PPR Repeat 219 248 1.7e-91 295.0 PPR repeat
XP_057781357.1 Pfam PF12854 PPR_1 Repeat 246 279 6.9e-118 384.7 PPR repeat
XP_057781357.1 Pfam PF13041 PPR_2 Repeat 250 299 5.2e-154 501.0 PPR repeat family
XP_057781357.1 Pfam PF01535 PPR Repeat 253 283 1.7e-91 295.0 PPR repeat
XP_057781357.1 Pfam PF13812 PPR_3 Repeat 274 332 5.7e-68 225.6 Pentatricopeptide repeat domain
XP_057781357.1 Pfam PF17177 PPR_long Repeat 275 374 8.8e-33 114.2 Pentacotripeptide-repeat region of PRORP
XP_057781357.1 Pfam PF23276 TPR_24 Repeat 278 329 6.5e-39 133.6 Pentatricopeptide repeat-containing protein
XP_057781357.1 Pfam PF12854 PPR_1 Repeat 282 314 6.9e-118 384.7 PPR repeat
XP_057781357.1 Pfam PF13041 PPR_2 Repeat 286 333 5.2e-154 501.0 PPR repeat family
XP_057781357.1 Pfam PF01535 PPR Repeat 288 318 1.7e-91 295.0 PPR repeat
XP_057781357.1 Pfam PF23276 TPR_24 Repeat 306 417 6.5e-39 133.6 Pentatricopeptide repeat-containing protein
XP_057781357.1 Pfam PF12854 PPR_1 Repeat 316 349 6.9e-118 384.7 PPR repeat
XP_057781357.1 Pfam PF13041 PPR_2 Repeat 320 369 5.2e-154 501.0 PPR repeat family
XP_057781357.1 Pfam PF01535 PPR Repeat 323 353 1.7e-91 295.0 PPR repeat
XP_057781357.1 Pfam PF13812 PPR_3 Repeat 331 367 5.7e-68 225.6 Pentatricopeptide repeat domain
XP_057781357.1 Pfam PF13812 PPR_3 Repeat 344 399 5.7e-68 225.6 Pentatricopeptide repeat domain
XP_057781357.1 Pfam PF12854 PPR_1 Repeat 351 376 6.9e-118 384.7 PPR repeat
XP_057781357.1 Pfam PF13041 PPR_2 Repeat 355 383 5.2e-154 501.0 PPR repeat family
XP_057781357.1 Pfam PF01535 PPR Repeat 358 386 1.7e-91 295.0 PPR repeat
XP_057781357.1 Pfam PF12854 PPR_1 Repeat 386 419 6.9e-118 384.7 PPR repeat
XP_057781357.1 Pfam PF13041 PPR_2 Repeat 391 439 5.2e-154 501.0 PPR repeat family
XP_057781357.1 Pfam PF01535 PPR Repeat 394 422 1.7e-91 295.0 PPR repeat
XP_057781357.1 Pfam PF13812 PPR_3 Repeat 413 470 5.7e-68 225.6 Pentatricopeptide repeat domain
XP_057781357.1 Pfam PF12854 PPR_1 Repeat 423 451 6.9e-118 384.7 PPR repeat
XP_057781357.1 Pfam PF01535 PPR Repeat 428 458 1.7e-91 295.0 PPR repeat
XP_057781357.1 Pfam PF13041 PPR_2 Repeat 432 474 5.2e-154 501.0 PPR repeat family
XP_057781357.1 Pfam PF12854 PPR_1 Repeat 456 487 6.9e-118 384.7 PPR repeat
XP_057781357.1 Pfam PF13041 PPR_2 Repeat 460 509 5.2e-154 501.0 PPR repeat family
XP_057781357.1 Pfam PF01535 PPR Repeat 463 493 1.7e-91 295.0 PPR repeat
XP_057781357.1 Pfam PF23276 TPR_24 Repeat 468 576 6.5e-39 133.6 Pentatricopeptide repeat-containing protein
XP_057781357.1 Pfam PF13812 PPR_3 Repeat 484 538 5.7e-68 225.6 Pentatricopeptide repeat domain
XP_057781357.1 Pfam PF12854 PPR_1 Repeat 491 524 6.9e-118 384.7 PPR repeat
XP_057781357.1 Pfam PF01535 PPR Repeat 499 528 1.7e-91 295.0 PPR repeat
XP_057781357.1 Pfam PF13041 PPR_2 Repeat 499 542 5.2e-154 501.0 PPR repeat family
XP_057781357.1 Pfam PF01535 PPR Repeat 533 563 1.7e-91 295.0 PPR repeat
XP_057781358.1 Pfam PF23276 TPR_24 Repeat 34 138 5e-35 121.0 Pentatricopeptide repeat-containing protein
XP_057781358.1 Pfam PF13812 PPR_3 Repeat 36 92 1.3e-60 202.0 Pentatricopeptide repeat domain
XP_057781358.1 Pfam PF12854 PPR_1 Repeat 45 75 2.3e-107 351.1 PPR repeat
XP_057781358.1 Pfam PF13041 PPR_2 Repeat 47 96 2.3e-135 441.3 PPR repeat family
XP_057781358.1 Pfam PF01535 PPR Repeat 51 80 1.4e-81 263.9 PPR repeat
XP_057781358.1 Pfam PF12854 PPR_1 Repeat 78 111 2.3e-107 351.1 PPR repeat
XP_057781358.1 Pfam PF13041 PPR_2 Repeat 82 131 2.3e-135 441.3 PPR repeat family
XP_057781358.1 Pfam PF01535 PPR Repeat 85 115 1.4e-81 263.9 PPR repeat
XP_057781358.1 Pfam PF13812 PPR_3 Repeat 106 164 1.3e-60 202.0 Pentatricopeptide repeat domain
XP_057781358.1 Pfam PF17177 PPR_long Repeat 109 207 3.5e-28 99.2 Pentacotripeptide-repeat region of PRORP
XP_057781358.1 Pfam PF12854 PPR_1 Repeat 114 146 2.3e-107 351.1 PPR repeat
XP_057781358.1 Pfam PF13041 PPR_2 Repeat 118 165 2.3e-135 441.3 PPR repeat family
XP_057781358.1 Pfam PF01535 PPR Repeat 120 150 1.4e-81 263.9 PPR repeat
XP_057781358.1 Pfam PF23276 TPR_24 Repeat 142 249 5e-35 121.0 Pentatricopeptide repeat-containing protein
XP_057781358.1 Pfam PF12854 PPR_1 Repeat 148 181 2.3e-107 351.1 PPR repeat
XP_057781358.1 Pfam PF13812 PPR_3 Repeat 148 199 1.3e-60 202.0 Pentatricopeptide repeat domain
XP_057781358.1 Pfam PF13041 PPR_2 Repeat 152 201 2.3e-135 441.3 PPR repeat family
XP_057781358.1 Pfam PF01535 PPR Repeat 155 185 1.4e-81 263.9 PPR repeat
XP_057781358.1 Pfam PF13812 PPR_3 Repeat 176 231 1.3e-60 202.0 Pentatricopeptide repeat domain
XP_057781358.1 Pfam PF12854 PPR_1 Repeat 183 208 2.3e-107 351.1 PPR repeat
XP_057781358.1 Pfam PF13041 PPR_2 Repeat 187 227 2.3e-135 441.3 PPR repeat family
XP_057781358.1 Pfam PF01535 PPR Repeat 190 218 1.4e-81 263.9 PPR repeat
XP_057781358.1 Pfam PF12854 PPR_1 Repeat 218 251 2.3e-107 351.1 PPR repeat
XP_057781358.1 Pfam PF13041 PPR_2 Repeat 223 271 2.3e-135 441.3 PPR repeat family
XP_057781358.1 Pfam PF01535 PPR Repeat 226 254 1.4e-81 263.9 PPR repeat
XP_057781358.1 Pfam PF13812 PPR_3 Repeat 245 302 1.3e-60 202.0 Pentatricopeptide repeat domain
XP_057781358.1 Pfam PF12854 PPR_1 Repeat 255 283 2.3e-107 351.1 PPR repeat
XP_057781358.1 Pfam PF01535 PPR Repeat 260 290 1.4e-81 263.9 PPR repeat
XP_057781358.1 Pfam PF13041 PPR_2 Repeat 264 306 2.3e-135 441.3 PPR repeat family
XP_057781358.1 Pfam PF12854 PPR_1 Repeat 288 319 2.3e-107 351.1 PPR repeat
XP_057781358.1 Pfam PF13041 PPR_2 Repeat 292 341 2.3e-135 441.3 PPR repeat family
XP_057781358.1 Pfam PF01535 PPR Repeat 295 325 1.4e-81 263.9 PPR repeat
XP_057781358.1 Pfam PF23276 TPR_24 Repeat 300 408 5e-35 121.0 Pentatricopeptide repeat-containing protein
XP_057781358.1 Pfam PF13812 PPR_3 Repeat 316 370 1.3e-60 202.0 Pentatricopeptide repeat domain
XP_057781358.1 Pfam PF12854 PPR_1 Repeat 323 356 2.3e-107 351.1 PPR repeat
XP_057781358.1 Pfam PF13041 PPR_2 Repeat 327 374 2.3e-135 441.3 PPR repeat family
XP_057781358.1 Pfam PF01535 PPR Repeat 331 360 1.4e-81 263.9 PPR repeat
XP_057781358.1 Pfam PF01535 PPR Repeat 365 395 1.4e-81 263.9 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057925374.1
ATTTCAACCCTTTTTTCAGATTCAATCACAACTCCTAATCTCGCAAGCGTCGCCCAACACTCACCCTTTCATCACATTAAATCTCACCGCCGATTAAGGATGACGAGCAGAAGAGCTGCTGTTTTTGCAATCGATCTCATTCATGGAACAGGATTTCTCTATCCATGGTCGCTTAAATCGGGTATTATCTCTCCTCCATTCTCTCACTTCTCTTCCAAGGCTTTTCAACCTAAGCAGCCGAGAATCGATTTCAGCTGTGT...
XM_057925375.1
ACCCTTTTTTCAGATTCAATCACAACTCCTAATCTCGCAAGCGTCGCCCAACACTCACCCTTTCATCACATTAAATCTCACCGCCGATTAAGGATGACGAGCAGAAGAGCTGCTGTTTTTGCAATCGATCTCATTCATGGAACAGGATTTCTCTATCCATGGTCGCTTAAATCGGGAAATGTCCTTCCAGCGAGAGATTTAGTTCGTAGATTAGAAAGAAGCAGGTTGAGACCCAATGTCAAGGCTTATAATGCATTACT...

CDS

2 records

下载 CDS FASTA
LOC130999754
ATGACGAGCAGAAGAGCTGCTGTTTTTGCAATCGATCTCATTCATGGAACAGGATTTCTCTATCCATGGTCGCTTAAATCGGGTATTATCTCTCCTCCATTCTCTCACTTCTCTTCCAAGGCTTTTCAACCTAAGCAGCCGAGAATCGATTTCAGCTGTGTTAAAGAATTAAATGATGCTATTGGAGTGTTTCAAAAAATGAAGAGTATGCAGCCGGAGCCTTCTGTTCGAATGTACAACAGTCTTTTGAGTGTCACTGT...
LOC130999754
ATGACGAGCAGAAGAGCTGCTGTTTTTGCAATCGATCTCATTCATGGAACAGGATTTCTCTATCCATGGTCGCTTAAATCGGGAAATGTCCTTCCAGCGAGAGATTTAGTTCGTAGATTAGAAAGAAGCAGGTTGAGACCCAATGTCAAGGCTTATAATGCATTACTCGACGGGCTACGCAAATCTGGAATGGTGGATGATGCTCTCCAGCTCCTATCCGCGATGATCGAAAAGGGTATTACACCCAATGTTGTCACGTA...

Protein

2 records

下载 Protein FASTA
XP_057781357.1
MTSRRAAVFAIDLIHGTGFLYPWSLKSGIISPPFSHFSSKAFQPKQPRIDFSCVKELNDAIGVFQKMKSMQPEPSVRMYNSLLSVTVKIEQYSFALYMFDEMLRMGVPINVYTMNIAVNCCCLLKDIKSGFAVMGIFFKRGYEPDVATFTTLIKGLFLNHKVAEAGKLFNMLLRFRICEPNDIMILTMVDGLCKSGNVLPARDLVRRLERSRLRPNVKAYNALLDGLRKSGMVDDALQLLSAMIEKGITPNVVTYNSMIQ...
XP_057781358.1
MTSRRAAVFAIDLIHGTGFLYPWSLKSGNVLPARDLVRRLERSRLRPNVKAYNALLDGLRKSGMVDDALQLLSAMIEKGITPNVVTYNSMIQGLCDLRRLEDVKVLVNEMSNSNISLDVVTFSILIDAYCKERKMKEAEDLLEIMKQRNVCPNVVTYNAIMEGYCLRGEIDKALQVLDSMVDKGLKPDIVTYNCLLNGYCRKGRIDEAWLHFLEVPLKGLEHDTCTYNTMIHGLFSERRFSEGWKLFKDMEARRVTPNIY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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