当前解析结果
SmilChr08G000131| 统一新 Gene ID | SmilChr08G000131 |
|---|---|
| 名称 | SmilChr08G000131 |
| 描述 | stearoyl-[acyl-carrier-protein] 9-desaturase, chloroplastic |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 816269 - 817842 / - |
| NCBI Gene ID | LOC130999755 |
|---|---|
| GeneID | 130999755 |
| locus_tag | - |
| NCBI Name | LOC130999755 |
| 原始查询 | LOC130999755 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | stearoyl-[acyl-carrier-protein] 9-desaturase, chloroplastic |
| 产物 | stearoyl-[acyl-carrier-protein] 9-desaturase%2C chloroplastic |
| Arabidopsis | AT2G43710 (SSI2)Plant stearoyl-acyl-carrier-protein desaturase family protein [Source:NCBI gene (formerly Entrezgene);Acc:818973] identity=87; qcov=1; evalue=0; confidence=high |
| Rice | Os01g0919900 (OsSSI2)- identity=85.8; qcov=1; evalue=0; confidence=high |
| GO | GO:0006633 (fatty acid biosynthetic process); GO:0009570 (chloroplast stroma); GO:0045300 (stearoyl-[ACP] desaturase activity) |
| KEGG | smil00061 (Fatty acid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01040 (Biosynthesis of unsaturated fatty acids - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF03405 (FA_desaturase_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999755 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057781359.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057781359.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057781359.1 |
| 4 | Nucleoplasm | 核质 | 0.20000 | XP_057781359.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057781359.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:816579 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr8:816589 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B130,B35,B37,C78 |
Chr8:816598 |
G |
GC |
1bp_insertion | frameshift_variant | 9 | B110,B120,B39,B5,B75,B78,C17,C47,C67 |
Chr8:816599 |
A |
ATG |
2bp_insertion | frameshift_variant | 2 | B78,C47 |
Chr8:816599 |
A |
ATG |
2bp_insertion | CDS_variant | 2 | B78,C47 |
Chr8:816653 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B102,C34 |
Chr8:816659 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B78,C46 |
Chr8:816670 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B33,B48,B87,C46 |
Chr8:816699 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B16,B80,C46,C73 |
Chr8:816831 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr8:816853 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A25,B24 |
Chr8:816901 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B34 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057781359.1PF03405
FA_desaturase_2 5-325 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781359.1 |
Pfam | PF03405 |
FA_desaturase_2 | Domain | 5 | 325 | 5.2e-162 | 538.9 | Fatty acid desaturase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。