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TF 结合位点 TF 靶基因 EMS 突变
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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G000133

染色体: Chr08 坐标: 832455-834592 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G000133
名称SmilChr08G000133
描述pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向832455 - 834592 / +

ID 对照

NCBI Gene IDLOC130999757
GeneID130999757
locus_tag-
NCBI NameLOC130999757
原始查询LOC130999757

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like
产物pentatricopeptide repeat-containing protein At1g12300%2C mitochondrial-like
ArabidopsisAT1G12300 (AT1G12300)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837784]
identity=40.1; qcov=0.912; evalue=1.31e-99; confidence=medium
RiceOs10g0495200 (Rf4)
-
identity=36.5; qcov=0.856; evalue=3.18e-79; confidence=medium
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130999757

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057781361.1
2 Chloroplast 叶绿体 0.20000 XP_057781361.1
3 Nucleus 细胞核 0.00000 XP_057781361.1
4 Chromosome 染色体 0.00000 XP_057781361.1
5 Centromere 着丝粒 0.00000 XP_057781361.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:832553 G A EMS_canonical_SNV CDS_variant 2 A9,B8
Chr8:832581 G A EMS_canonical_SNV CDS_variant 4 B104,B29,B51,C35
Chr8:832586 C T EMS_canonical_SNV CDS_variant 3 B71,C42,C62
Chr8:832985 C T EMS_canonical_SNV CDS_variant 2 B131,C34
Chr8:833060 G A EMS_canonical_SNV CDS_variant 1 B67
Chr8:833067 C T EMS_canonical_SNV CDS_variant 4 B136,B53,C34,D11
Chr8:833074 G A EMS_canonical_SNV CDS_variant 3 B1,B138,C74
Chr8:833107 C T EMS_canonical_SNV CDS_variant 3 C48,C57,C61
Chr8:833148 G A EMS_canonical_SNV CDS_variant 2 B14,C12
Chr8:833150 G A EMS_canonical_SNV CDS_variant 2 B140,B53
Chr8:833198 C T EMS_canonical_SNV CDS_variant 3 B107,C1,C9
Chr8:833246 G A EMS_canonical_SNV CDS_variant 2 C29,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781361.1
493 aa
N
1
246
493
PPR_1
PPR_2
PPR
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_long
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR
C
PF12854 PPR_1 34-63 aa PF13041 PPR_2 37-87 aa PF01535 PPR 41-66 aa PF01535 PPR 80-104 aa PF23276 TPR_24 94-205 aa PF13812 PPR_3 97-153 aa PF12854 PPR_1 106-136 aa PF13041 PPR_2 108-157 aa PF01535 PPR 112-141 aa PF12854 PPR_1 139-172 aa PF13041 PPR_2 143-192 aa PF01535 PPR 146-176 aa PF13812 PPR_3 167-224 aa PF17177 PPR_long 167-266 aa PF12854 PPR_1 175-207 aa PF13041 PPR_2 179-226 aa PF01535 PPR 181-211 aa PF12854 PPR_1 210-242 aa PF13041 PPR_2 213-261 aa PF01535 PPR 216-246 aa PF13812 PPR_3 237-292 aa PF12854 PPR_1 244-269 aa PF01535 PPR 251-279 aa PF12854 PPR_1 279-312 aa PF13041 PPR_2 284-332 aa PF01535 PPR 287-315 aa PF13812 PPR_3 306-363 aa PF12854 PPR_1 316-344 aa PF13041 PPR_2 318-367 aa PF01535 PPR 321-351 aa PF17177 PPR_long 337-465 aa PF12854 PPR_1 349-380 aa PF13041 PPR_2 353-390 aa PF01535 PPR 356-386 aa PF23276 TPR_24 361-469 aa PF13812 PPR_3 377-431 aa PF12854 PPR_1 384-417 aa PF13041 PPR_2 391-435 aa PF01535 PPR 392-421 aa PF01535 PPR 426-454 aa
XP_057781362.1
432 aa
N
1
216
432
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_long
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR
C
PF23276 TPR_24 34-144 aa PF13812 PPR_3 36-92 aa PF12854 PPR_1 45-75 aa PF13041 PPR_2 47-96 aa PF01535 PPR 51-80 aa PF12854 PPR_1 78-111 aa PF13041 PPR_2 82-128 aa PF01535 PPR 85-115 aa PF13812 PPR_3 106-163 aa PF17177 PPR_long 106-206 aa PF12854 PPR_1 114-146 aa PF13041 PPR_2 118-165 aa PF01535 PPR 120-150 aa PF12854 PPR_1 149-181 aa PF13041 PPR_2 152-191 aa PF01535 PPR 155-185 aa PF13812 PPR_3 176-231 aa PF12854 PPR_1 183-208 aa PF13041 PPR_2 187-234 aa PF01535 PPR 190-218 aa PF12854 PPR_1 218-251 aa PF13041 PPR_2 223-271 aa PF01535 PPR 226-254 aa PF13812 PPR_3 245-302 aa PF12854 PPR_1 255-283 aa PF13041 PPR_2 258-306 aa PF01535 PPR 260-290 aa PF17177 PPR_long 283-404 aa PF12854 PPR_1 288-319 aa PF13041 PPR_2 292-329 aa PF01535 PPR 295-325 aa PF23276 TPR_24 300-408 aa PF13812 PPR_3 316-370 aa PF12854 PPR_1 323-356 aa PF13041 PPR_2 327-374 aa PF01535 PPR 331-360 aa PF01535 PPR 365-393 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057781361.1 Pfam PF12854 PPR_1 Repeat 34 63 7.7e-119 387.8 PPR repeat
XP_057781361.1 Pfam PF13041 PPR_2 Repeat 37 87 6.7e-148 481.5 PPR repeat family
XP_057781361.1 Pfam PF01535 PPR Repeat 41 66 1.9e-88 285.4 PPR repeat
XP_057781361.1 Pfam PF01535 PPR Repeat 80 104 1.9e-88 285.4 PPR repeat
XP_057781361.1 Pfam PF23276 TPR_24 Repeat 94 205 9.9e-33 113.6 Pentatricopeptide repeat-containing protein
XP_057781361.1 Pfam PF13812 PPR_3 Repeat 97 153 4.1e-59 197.3 Pentatricopeptide repeat domain
XP_057781361.1 Pfam PF12854 PPR_1 Repeat 106 136 7.7e-119 387.8 PPR repeat
XP_057781361.1 Pfam PF13041 PPR_2 Repeat 108 157 6.7e-148 481.5 PPR repeat family
XP_057781361.1 Pfam PF01535 PPR Repeat 112 141 1.9e-88 285.4 PPR repeat
XP_057781361.1 Pfam PF12854 PPR_1 Repeat 139 172 7.7e-119 387.8 PPR repeat
XP_057781361.1 Pfam PF13041 PPR_2 Repeat 143 192 6.7e-148 481.5 PPR repeat family
XP_057781361.1 Pfam PF01535 PPR Repeat 146 176 1.9e-88 285.4 PPR repeat
XP_057781361.1 Pfam PF13812 PPR_3 Repeat 167 224 4.1e-59 197.3 Pentatricopeptide repeat domain
XP_057781361.1 Pfam PF17177 PPR_long Repeat 167 266 5e-28 98.6 Pentacotripeptide-repeat region of PRORP
XP_057781361.1 Pfam PF12854 PPR_1 Repeat 175 207 7.7e-119 387.8 PPR repeat
XP_057781361.1 Pfam PF13041 PPR_2 Repeat 179 226 6.7e-148 481.5 PPR repeat family
XP_057781361.1 Pfam PF01535 PPR Repeat 181 211 1.9e-88 285.4 PPR repeat
XP_057781361.1 Pfam PF12854 PPR_1 Repeat 210 242 7.7e-119 387.8 PPR repeat
XP_057781361.1 Pfam PF13041 PPR_2 Repeat 213 261 6.7e-148 481.5 PPR repeat family
XP_057781361.1 Pfam PF01535 PPR Repeat 216 246 1.9e-88 285.4 PPR repeat
XP_057781361.1 Pfam PF13812 PPR_3 Repeat 237 292 4.1e-59 197.3 Pentatricopeptide repeat domain
XP_057781361.1 Pfam PF12854 PPR_1 Repeat 244 269 7.7e-119 387.8 PPR repeat
XP_057781361.1 Pfam PF01535 PPR Repeat 251 279 1.9e-88 285.4 PPR repeat
XP_057781361.1 Pfam PF12854 PPR_1 Repeat 279 312 7.7e-119 387.8 PPR repeat
XP_057781361.1 Pfam PF13041 PPR_2 Repeat 284 332 6.7e-148 481.5 PPR repeat family
XP_057781361.1 Pfam PF01535 PPR Repeat 287 315 1.9e-88 285.4 PPR repeat
XP_057781361.1 Pfam PF13812 PPR_3 Repeat 306 363 4.1e-59 197.3 Pentatricopeptide repeat domain
XP_057781361.1 Pfam PF12854 PPR_1 Repeat 316 344 7.7e-119 387.8 PPR repeat
XP_057781361.1 Pfam PF13041 PPR_2 Repeat 318 367 6.7e-148 481.5 PPR repeat family
XP_057781361.1 Pfam PF01535 PPR Repeat 321 351 1.9e-88 285.4 PPR repeat
XP_057781361.1 Pfam PF17177 PPR_long Repeat 337 465 5e-28 98.6 Pentacotripeptide-repeat region of PRORP
XP_057781361.1 Pfam PF12854 PPR_1 Repeat 349 380 7.7e-119 387.8 PPR repeat
XP_057781361.1 Pfam PF13041 PPR_2 Repeat 353 390 6.7e-148 481.5 PPR repeat family
XP_057781361.1 Pfam PF01535 PPR Repeat 356 386 1.9e-88 285.4 PPR repeat
XP_057781361.1 Pfam PF23276 TPR_24 Repeat 361 469 9.9e-33 113.6 Pentatricopeptide repeat-containing protein
XP_057781361.1 Pfam PF13812 PPR_3 Repeat 377 431 4.1e-59 197.3 Pentatricopeptide repeat domain
XP_057781361.1 Pfam PF12854 PPR_1 Repeat 384 417 7.7e-119 387.8 PPR repeat
XP_057781361.1 Pfam PF13041 PPR_2 Repeat 391 435 6.7e-148 481.5 PPR repeat family
XP_057781361.1 Pfam PF01535 PPR Repeat 392 421 1.9e-88 285.4 PPR repeat
XP_057781361.1 Pfam PF01535 PPR Repeat 426 454 1.9e-88 285.4 PPR repeat
XP_057781362.1 Pfam PF23276 TPR_24 Repeat 34 144 7.3e-33 114.0 Pentatricopeptide repeat-containing protein
XP_057781362.1 Pfam PF13812 PPR_3 Repeat 36 92 9e-56 186.6 Pentatricopeptide repeat domain
XP_057781362.1 Pfam PF12854 PPR_1 Repeat 45 75 7e-106 346.3 PPR repeat
XP_057781362.1 Pfam PF13041 PPR_2 Repeat 47 96 7.6e-134 436.5 PPR repeat family
XP_057781362.1 Pfam PF01535 PPR Repeat 51 80 2e-81 263.4 PPR repeat
XP_057781362.1 Pfam PF12854 PPR_1 Repeat 78 111 7e-106 346.3 PPR repeat
XP_057781362.1 Pfam PF13041 PPR_2 Repeat 82 128 7.6e-134 436.5 PPR repeat family
XP_057781362.1 Pfam PF01535 PPR Repeat 85 115 2e-81 263.4 PPR repeat
XP_057781362.1 Pfam PF13812 PPR_3 Repeat 106 163 9e-56 186.6 Pentatricopeptide repeat domain
XP_057781362.1 Pfam PF17177 PPR_long Repeat 106 206 8.8e-27 94.6 Pentacotripeptide-repeat region of PRORP
XP_057781362.1 Pfam PF12854 PPR_1 Repeat 114 146 7e-106 346.3 PPR repeat
XP_057781362.1 Pfam PF13041 PPR_2 Repeat 118 165 7.6e-134 436.5 PPR repeat family
XP_057781362.1 Pfam PF01535 PPR Repeat 120 150 2e-81 263.4 PPR repeat
XP_057781362.1 Pfam PF12854 PPR_1 Repeat 149 181 7e-106 346.3 PPR repeat
XP_057781362.1 Pfam PF13041 PPR_2 Repeat 152 191 7.6e-134 436.5 PPR repeat family
XP_057781362.1 Pfam PF01535 PPR Repeat 155 185 2e-81 263.4 PPR repeat
XP_057781362.1 Pfam PF13812 PPR_3 Repeat 176 231 9e-56 186.6 Pentatricopeptide repeat domain
XP_057781362.1 Pfam PF12854 PPR_1 Repeat 183 208 7e-106 346.3 PPR repeat
XP_057781362.1 Pfam PF13041 PPR_2 Repeat 187 234 7.6e-134 436.5 PPR repeat family
XP_057781362.1 Pfam PF01535 PPR Repeat 190 218 2e-81 263.4 PPR repeat
XP_057781362.1 Pfam PF12854 PPR_1 Repeat 218 251 7e-106 346.3 PPR repeat
XP_057781362.1 Pfam PF13041 PPR_2 Repeat 223 271 7.6e-134 436.5 PPR repeat family
XP_057781362.1 Pfam PF01535 PPR Repeat 226 254 2e-81 263.4 PPR repeat
XP_057781362.1 Pfam PF13812 PPR_3 Repeat 245 302 9e-56 186.6 Pentatricopeptide repeat domain
XP_057781362.1 Pfam PF12854 PPR_1 Repeat 255 283 7e-106 346.3 PPR repeat
XP_057781362.1 Pfam PF13041 PPR_2 Repeat 258 306 7.6e-134 436.5 PPR repeat family
XP_057781362.1 Pfam PF01535 PPR Repeat 260 290 2e-81 263.4 PPR repeat
XP_057781362.1 Pfam PF17177 PPR_long Repeat 283 404 8.8e-27 94.6 Pentacotripeptide-repeat region of PRORP
XP_057781362.1 Pfam PF12854 PPR_1 Repeat 288 319 7e-106 346.3 PPR repeat
XP_057781362.1 Pfam PF13041 PPR_2 Repeat 292 329 7.6e-134 436.5 PPR repeat family
XP_057781362.1 Pfam PF01535 PPR Repeat 295 325 2e-81 263.4 PPR repeat
XP_057781362.1 Pfam PF23276 TPR_24 Repeat 300 408 7.3e-33 114.0 Pentatricopeptide repeat-containing protein
XP_057781362.1 Pfam PF13812 PPR_3 Repeat 316 370 9e-56 186.6 Pentatricopeptide repeat domain
XP_057781362.1 Pfam PF12854 PPR_1 Repeat 323 356 7e-106 346.3 PPR repeat
XP_057781362.1 Pfam PF13041 PPR_2 Repeat 327 374 7.6e-134 436.5 PPR repeat family
XP_057781362.1 Pfam PF01535 PPR Repeat 331 360 2e-81 263.4 PPR repeat
XP_057781362.1 Pfam PF01535 PPR Repeat 365 393 2e-81 263.4 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057925378.1
ACCCTTTTTTCAGATTCAATCACAACTCCTAAACTTGCAAGCGTCGCCCAACACTCTCCCTTTCTTCACATTAAATCTCTGCGCCGATTAAGGATGACGAGCAGAAGAGCTGCTGTTTCTGCAATCGATCTCATTCATGGAAGAGGATTTCTCAATCCATGGTCGCATAAATCGGGTTTATTTTTCAAGAGTGGTTGCGAACCAAATGTCACGACATTCAACACTCTGATTAAAGGGTTGTTTTTAAATCATAAGGTGGC...
XM_057925379.1
ACCCTTTTTTCAGATTCAATCACAACTCCTAAACTTGCAAGCGTCGCCCAACACTCTCCCTTTCTTCACATTAAATCTCTGCGCCGATTAAGGATGACGAGCAGAAGAGCTGCTGTTTCTGCAATCGATCTCATTCATGGAAGAGGATTTCTCAATCCATGGTCGCATAAATCGGGAAATGTCCTTCCAGCGAGAGATTTAGTTCGTAGATTAGAAAGAAGTAGGTTGAGACCCAATGTCAAGGCTTATAATGCATTACT...

CDS

2 records

下载 CDS FASTA
LOC130999757
ATGACGAGCAGAAGAGCTGCTGTTTCTGCAATCGATCTCATTCATGGAAGAGGATTTCTCAATCCATGGTCGCATAAATCGGGTTTATTTTTCAAGAGTGGTTGCGAACCAAATGTCACGACATTCAACACTCTGATTAAAGGGTTGTTTTTAAATCATAAGGTGGCCGAGGCTGGGAAATTGTTCAATATGCTTTTGCATTTCAGAATATGTGAGCCTAATGATGTTATGATTGTGACGATGGTAGATGGGCTTTGTAA...
LOC130999757
ATGACGAGCAGAAGAGCTGCTGTTTCTGCAATCGATCTCATTCATGGAAGAGGATTTCTCAATCCATGGTCGCATAAATCGGGAAATGTCCTTCCAGCGAGAGATTTAGTTCGTAGATTAGAAAGAAGTAGGTTGAGACCCAATGTCAAGGCTTATAATGCATTACTCGATGGGCTACGCAAATCTGGAATGGTGGATGATGCTCTCCAGCTCCTATCCGCGATGATCGAAAAGGGTATTACACCCGATGTTGTCACGTA...

Protein

2 records

下载 Protein FASTA
XP_057781361.1
MTSRRAAVSAIDLIHGRGFLNPWSHKSGLFFKSGCEPNVTTFNTLIKGLFLNHKVAEAGKLFNMLLHFRICEPNDVMIVTMVDGLCKSGNVLPARDLVRRLERSRLRPNVKAYNALLDGLRKSGMVDDALQLLSAMIEKGITPDVVTYNSMIQGLCDLGRLEDVKVLVNEMSNSNISLNVVTFNILIDAYCKERKMEEAQDLLKTMKQHNVCPDVVTYNTLIDGYCFRGEIGKARQVLDSMVDKGLKPNIVSCGCLLNGY...
XP_057781362.1
MTSRRAAVSAIDLIHGRGFLNPWSHKSGNVLPARDLVRRLERSRLRPNVKAYNALLDGLRKSGMVDDALQLLSAMIEKGITPDVVTYNSMIQGLCDLGRLEDVKVLVNEMSNSNISLNVVTFNILIDAYCKERKMEEAQDLLKTMKQHNVCPDVVTYNTLIDGYCFRGEIGKARQVLDSMVDKGLKPNIVSCGCLLNGYCSKGRIDEAWLHFLEVPLKGLEHDTCTYNTMIHGLFSKRRFSEGWKLFKDMEARRVTPNIY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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