当前解析结果
SmilChr08G000141| 统一新 Gene ID | SmilChr08G000141 |
|---|---|
| 名称 | SmilChr08G000141 |
| 描述 | putative disease resistance protein RGA4 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 909308 - 917061 / + |
| NCBI Gene ID | LOC130999768 |
|---|---|
| GeneID | 130999768 |
| locus_tag | - |
| NCBI Name | LOC130999768 |
| 原始查询 | LOC130999768 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative disease resistance protein RGA4 |
| 产物 | putative disease resistance protein RGA4 |
| Arabidopsis | AT3G14470 (AT3G14470)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=31.6; qcov=0.975; evalue=6.82e-115; confidence=low |
| Rice | Os05g0492200 (YR1)- identity=33.7; qcov=1.04; evalue=4.76e-133; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999768 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057781381.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057781381.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057781381.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781381.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781381.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:910436 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C67 |
Chr8:910461 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C53 |
Chr8:910472 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A4 |
Chr8:910480 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C52,C53 |
Chr8:910483 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C58,D5 |
Chr8:910490 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B16,B62,B73,B93 |
Chr8:910543 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr8:910640 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr8:910644 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A7,B99,C27 |
Chr8:910647 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr8:910650 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A2,B99,C52 |
Chr8:910703 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A1,A7,C84 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781381.1PF18052
Rx_N 8-97 aa
PF00931
NB-ARC 177-348 aa
PF23559
WHD_DRP 429-500 aa
PF23598
LRR_14 537-863 aa
PF25019
LRR_R13L1-DRL21 664-799 aa
XP_057781383.1PF18052
Rx_N 8-97 aa
PF00931
NB-ARC 177-348 aa
PF23559
WHD_DRP 429-500 aa
PF23598
LRR_14 537-863 aa
PF25019
LRR_R13L1-DRL21 664-799 aa
XP_057781384.1PF18052
Rx_N 8-97 aa
PF00931
NB-ARC 177-348 aa
PF23559
WHD_DRP 429-500 aa
PF23598
LRR_14 537-863 aa
PF25019
LRR_R13L1-DRL21 664-799 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781381.1 |
Pfam | PF18052 |
Rx_N | Domain | 8 | 97 | 1.7e-18 | 67.2 | Rx N-terminal domain |
XP_057781381.1 |
Pfam | PF00931 |
NB-ARC | Domain | 177 | 348 | 3.1e-35 | 122.0 | NB-ARC domain |
XP_057781381.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 429 | 500 | 3.8e-23 | 82.0 | Disease resistance protein Winged helix domain |
XP_057781381.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 537 | 863 | 1.3e-33 | 117.0 | Leucine-rich repeat region |
XP_057781381.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 664 | 799 | 1.8e-39 | 135.3 | R13L1/DRL21 LRRs |
XP_057781383.1 |
Pfam | PF18052 |
Rx_N | Domain | 8 | 97 | 1.7e-18 | 67.2 | Rx N-terminal domain |
XP_057781383.1 |
Pfam | PF00931 |
NB-ARC | Domain | 177 | 348 | 3.1e-35 | 122.0 | NB-ARC domain |
XP_057781383.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 429 | 500 | 3.8e-23 | 82.0 | Disease resistance protein Winged helix domain |
XP_057781383.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 537 | 863 | 1.3e-33 | 117.0 | Leucine-rich repeat region |
XP_057781383.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 664 | 799 | 1.8e-39 | 135.3 | R13L1/DRL21 LRRs |
XP_057781384.1 |
Pfam | PF18052 |
Rx_N | Domain | 8 | 97 | 1.7e-18 | 67.2 | Rx N-terminal domain |
XP_057781384.1 |
Pfam | PF00931 |
NB-ARC | Domain | 177 | 348 | 3.1e-35 | 122.0 | NB-ARC domain |
XP_057781384.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 429 | 500 | 3.8e-23 | 82.0 | Disease resistance protein Winged helix domain |
XP_057781384.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 537 | 863 | 1.3e-33 | 117.0 | Leucine-rich repeat region |
XP_057781384.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 664 | 799 | 1.8e-39 | 135.3 | R13L1/DRL21 LRRs |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。