Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000166`

染色体: Chr08 坐标: 1127134-1136416 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000166`
名称	SmilChr08G000166
描述	probable disease resistance protein At5g47250
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	1127134 - 1136416 / `+`

ID 对照

NCBI Gene ID	`LOC130999780`
GeneID	`130999780`
locus_tag	`-`
NCBI Name	`LOC130999780`
原始查询	`LOC130999780`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable disease resistance protein At5g47250
产物	probable disease resistance protein At5g47250
Arabidopsis	`AT4G27190` (AT4G27190) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:828827] identity=25.9; qcov=0.825; evalue=1.81e-47; confidence=low
Rice	`Os04g0470500` - identity=30.4; qcov=0.434; evalue=2.82e-38; confidence=low
GO	GO:0005515 (protein binding); GO:0016887 (ATP hydrolysis activity); GO:0043531 (ADP binding)
KEGG	smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00931 (NB-ARC); PF13855 (LRR_8); PF23247 (LRR_RPS2); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:130999780

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057781401.1`
2	Cytosol	细胞质基质	0.20000	`XP_057781401.1`
3	Nucleus	细胞核	0.00000	`XP_057781401.1`
4	Chromosome	染色体	0.00000	`XP_057781401.1`
5	Centromere	着丝粒	0.00000	`XP_057781401.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:1129043`	`A`	`ATG`	2bp_insertion	frameshift_variant	3	C17,C4,C7
`Chr8:1129043`	`A`	`ATG`	2bp_insertion	CDS_variant	3	C17,C4,C7
`Chr8:1129044`	`CCA`	`C`	2bp_deletion	frameshift_variant	3	C17,C4,C7
`Chr8:1129044`	`CCA`	`C`	2bp_deletion	CDS_variant	3	C17,C4,C7
`Chr8:1129049`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B117,C65,C78
`Chr8:1129078`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B134,B99,C26,C6
`Chr8:1129139`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B135,C14,C83
`Chr8:1129159`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B133,B18,B28,C26,C75
`Chr8:1129282`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C23
`Chr8:1129282`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr8:1129324`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B114,C47
`Chr8:1129428`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B108,B46,C23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781401.1

1099 aa

550

1099

NB-ARC

LRR_8

LRR_14

LRR_RPS2

PF00931 NB-ARC 179-338 aa PF13855 LRR_8 524-583 aa PF23598 LRR_14 570-735 aa PF23247 LRR_RPS2 794-894 aa PF23247 LRR_RPS2 847-961 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781401.1`	Pfam	`PF00931`	NB-ARC	Domain	179	338	1e-20	74.7	NB-ARC domain
`XP_057781401.1`	Pfam	`PF13855`	LRR_8	Repeat	524	583	1.7e-10	41.2	Leucine rich repeat
`XP_057781401.1`	Pfam	`PF23598`	LRR_14	Repeat	570	735	4.3e-17	62.6	Leucine-rich repeat region
`XP_057781401.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	794	894	5.9e-22	79.1	Plant disease resistance protein RPS2-like, leucine-rich repeats
`XP_057781401.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	847	961	5.9e-22	79.1	Plant disease resistance protein RPS2-like, leucine-rich repeats

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057925418.1
GTGGTGGGTGTGGACTGTGGACTGTGGAGAGCGACCTTCGCCCATTGACTCAACTTTGCATCTCAAAAAATCCTAGTAAAACTTTTCATCACTCCTGAAAATGCTCTCTCTGTCGAAATAAATCAAAAATAGGGCCTTTTGCGCGCGGAATCTGAAAGACTTCCTTCTTAGTTCTGAGAAGTTAAGGATGGTGTGGCAAATTTTGCAAACGTTGTACCAGCCTGTTAAAGACGGGGTTTCATACATGAAGGGCAAGGCAA...

CDS

1 records

下载 CDS FASTA

LOC130999780
ATGGTGTGGCAAATTTTGCAAACGTTGTACCAGCCTGTTAAAGACGGGGTTTCATACATGAAGGGCAAGGCAAAATATGTTAAAAAATTAGAAGACAATTTAACAAAGATCGTTGCAGAGTTGGCTAACTTTTATTCTAGGAAGCGCCAAATTGATCAAACACTTGAAGAAAGTGTGTCTAAAGAAAGAAGTGATCTATACAATGTTAGGATCACGCAGTTTGAAGTCTTGGAGAAAAGATCTTTCAAGTACATCAATAA...

Protein

1 records

下载 Protein FASTA

XP_057781401.1
MVWQILQTLYQPVKDGVSYMKGKAKYVKKLEDNLTKIVAELANFYSRKRQIDQTLEESVSKERSDLYNVRITQFEVLEKRSFKYINNYRRLCHNDLPNFEAHDVSSATDVIKALQERKPIILTRKFFKLAKLSRKISELLADISEVTEKMKQEDVLRDKKIESVQVKHDDIDLPSSTGYVERILRYLSEDGIRSMGILGAIGVGKTTILKTLNNQLKNSSMKMKFEYVIWIDCDKQRDAKDLIQDEIMGRLKLEKAKSAE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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