当前解析结果
SmilChr08G000167| 统一新 Gene ID | SmilChr08G000167 |
|---|---|
| 名称 | SmilChr08G000167 |
| 描述 | disease resistance protein At4g27190-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 1149877 - 1160117 / + |
| NCBI Gene ID | LOC130999782 |
|---|---|
| GeneID | 130999782 |
| locus_tag | - |
| NCBI Name | LOC130999782 |
| 原始查询 | LOC130999782 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | disease resistance protein At4g27190-like |
| 产物 | disease resistance protein At4g27190-like |
| Arabidopsis | AT4G27190 (AT4G27190)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:828827] identity=26.6; qcov=0.849; evalue=1.93e-52; confidence=low |
| Rice | Os04g0470500- identity=30.2; qcov=0.448; evalue=9.13e-38; confidence=low |
| GO | GO:0005515 (protein binding); GO:0016887 (ATP hydrolysis activity); GO:0043531 (ADP binding) |
| KEGG | smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00931 (NB-ARC); PF13855 (LRR_8); PF23247 (LRR_RPS2); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999782 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057781403.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057781403.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057781403.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781403.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781403.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:1156039 |
A |
ATG |
2bp_insertion | frameshift_variant | 2 | B138,C4 |
Chr8:1156039 |
A |
ATG |
2bp_insertion | CDS_variant | 2 | B138,C4 |
Chr8:1156040 |
CCA |
C |
2bp_deletion | frameshift_variant | 2 | B138,C4 |
Chr8:1156040 |
CCA |
C |
2bp_deletion | CDS_variant | 2 | B138,C4 |
Chr8:1156045 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B35,C78 |
Chr8:1156074 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A25,B37,B99,C26,C6 |
Chr8:1156176 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
Chr8:1156278 |
C |
T |
EMS_canonical_SNV | stop_gained | 18 | A13,B108,B109,B118,B119,B135,B16,B42,B43,B45,B46,B48,B84,C14,C23,C73,C83,D6 |
Chr8:1156319 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B113,C86 |
Chr8:1156333 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A1,B20,B84,C25,C42 |
Chr8:1156343 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A1,A16,B84,C25,C42 |
Chr8:1156385 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B24,B62,B77,C19 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781403.1PF00931
NB-ARC 179-337 aa
PF13855
LRR_8 525-583 aa
PF23598
LRR_14 570-762 aa
PF23247
LRR_RPS2 794-894 aa
PF23247
LRR_RPS2 847-961 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781403.1 |
Pfam | PF00931 |
NB-ARC | Domain | 179 | 337 | 1e-20 | 74.7 | NB-ARC domain |
XP_057781403.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 525 | 583 | 4.5e-10 | 39.8 | Leucine rich repeat |
XP_057781403.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 570 | 762 | 1.2e-15 | 57.9 | Leucine-rich repeat region |
XP_057781403.1 |
Pfam | PF23247 |
LRR_RPS2 | Repeat | 794 | 894 | 4.5e-20 | 72.9 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
XP_057781403.1 |
Pfam | PF23247 |
LRR_RPS2 | Repeat | 847 | 961 | 4.5e-20 | 72.9 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。