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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G000177

染色体: Chr08 坐标: 1206305-1209105 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G000177
名称SmilChr08G000177
描述pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向1206305 - 1209105 / +

ID 对照

NCBI Gene IDLOC130999786
GeneID130999786
locus_tag-
NCBI NameLOC130999786
原始查询LOC130999786

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like
产物pentatricopeptide repeat-containing protein At3g22470%2C mitochondrial-like
ArabidopsisAT3G22470 (AT3G22470)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821818]
identity=32.9; qcov=0.792; evalue=5.08e-111; confidence=low
RiceOs10g0495200 (Rf4)
-
identity=30.2; qcov=0.913; evalue=8.1e-106; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130999786

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057781408.1
2 Chloroplast 叶绿体 0.20000 XP_057781408.1
3 Nucleus 细胞核 0.00000 XP_057781408.1
4 Chromosome 染色体 0.00000 XP_057781408.1
5 Centromere 着丝粒 0.00000 XP_057781408.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:1206534 G A EMS_canonical_SNV CDS_variant 2 B121,C17
Chr8:1206541 C T EMS_canonical_SNV CDS_variant 1 B47
Chr8:1206552 C T EMS_canonical_SNV CDS_variant 1 B127
Chr8:1206564 G A EMS_canonical_SNV CDS_variant 1 B2
Chr8:1206611 C T EMS_canonical_SNV CDS_variant 5 A24,A7,B69,C3,C74
Chr8:1206682 G A EMS_canonical_SNV CDS_variant 2 B79,B88
Chr8:1206746 AT A 1bp_deletion frameshift_variant 4 B111,B123,B13,C1
Chr8:1206746 AT A 1bp_deletion CDS_variant 4 B111,B123,B13,C1
Chr8:1206765 C T EMS_canonical_SNV CDS_variant 4 A1,B111,B15,C84
Chr8:1206767 C T EMS_canonical_SNV CDS_variant 1 B24
Chr8:1206827 A ATT 2bp_insertion frameshift_variant 4 C32,C45,C68,C78
Chr8:1206827 A ATT 2bp_insertion CDS_variant 4 C32,C45,C68,C78

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781408.1
703 aa
N
1
352
703
PPR_3
PPR_2
PPR
PPR
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
C
PF13812 PPR_3 54-86 aa PF13041 PPR_2 74-123 aa PF01535 PPR 78-107 aa PF01535 PPR 188-212 aa PF17177 PPR_long 201-327 aa PF13812 PPR_3 206-264 aa PF12854 PPR_1 213-243 aa PF13041 PPR_2 215-260 aa PF01535 PPR 219-245 aa PF17177 PPR_long 238-346 aa PF12854 PPR_1 248-278 aa PF13041 PPR_2 250-299 aa PF01535 PPR 253-282 aa PF13812 PPR_3 274-330 aa PF12854 PPR_1 282-313 aa PF13041 PPR_2 285-334 aa PF01535 PPR 288-318 aa PF12854 PPR_1 317-349 aa PF01535 PPR 323-353 aa PF13041 PPR_2 325-368 aa PF13812 PPR_3 344-402 aa PF12854 PPR_1 351-383 aa PF13041 PPR_2 355-404 aa PF01535 PPR 358-385 aa PF23276 TPR_24 361-452 aa PF13041 PPR_2 391-434 aa PF01535 PPR 393-423 aa PF13812 PPR_3 414-459 aa PF12854 PPR_1 421-453 aa PF13041 PPR_2 425-474 aa PF01535 PPR 428-455 aa PF13812 PPR_3 449-504 aa PF12854 PPR_1 457-486 aa PF01535 PPR 463-486 aa PF13041 PPR_2 496-544 aa PF01535 PPR 498-525 aa PF17177 PPR_long 512-617 aa PF13812 PPR_3 518-575 aa PF12854 PPR_1 528-559 aa PF01535 PPR 534-563 aa PF13041 PPR_2 536-579 aa PF12854 PPR_1 561-591 aa PF01535 PPR 568-598 aa PF13812 PPR_3 589-643 aa PF12854 PPR_1 596-629 aa PF13041 PPR_2 600-644 aa PF01535 PPR 603-633 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057781408.1 Pfam PF13812 PPR_3 Repeat 54 86 1.5e-79 262.8 Pentatricopeptide repeat domain
XP_057781408.1 Pfam PF13041 PPR_2 Repeat 74 123 1.1e-161 525.6 PPR repeat family
XP_057781408.1 Pfam PF01535 PPR Repeat 78 107 2e-101 326.1 PPR repeat
XP_057781408.1 Pfam PF01535 PPR Repeat 188 212 2e-101 326.1 PPR repeat
XP_057781408.1 Pfam PF17177 PPR_long Repeat 201 327 1.7e-31 109.9 Pentacotripeptide-repeat region of PRORP
XP_057781408.1 Pfam PF13812 PPR_3 Repeat 206 264 1.5e-79 262.8 Pentatricopeptide repeat domain
XP_057781408.1 Pfam PF12854 PPR_1 Repeat 213 243 7.2e-137 445.5 PPR repeat
XP_057781408.1 Pfam PF13041 PPR_2 Repeat 215 260 1.1e-161 525.6 PPR repeat family
XP_057781408.1 Pfam PF01535 PPR Repeat 219 245 2e-101 326.1 PPR repeat
XP_057781408.1 Pfam PF17177 PPR_long Repeat 238 346 1.7e-31 109.9 Pentacotripeptide-repeat region of PRORP
XP_057781408.1 Pfam PF12854 PPR_1 Repeat 248 278 7.2e-137 445.5 PPR repeat
XP_057781408.1 Pfam PF13041 PPR_2 Repeat 250 299 1.1e-161 525.6 PPR repeat family
XP_057781408.1 Pfam PF01535 PPR Repeat 253 282 2e-101 326.1 PPR repeat
XP_057781408.1 Pfam PF13812 PPR_3 Repeat 274 330 1.5e-79 262.8 Pentatricopeptide repeat domain
XP_057781408.1 Pfam PF12854 PPR_1 Repeat 282 313 7.2e-137 445.5 PPR repeat
XP_057781408.1 Pfam PF13041 PPR_2 Repeat 285 334 1.1e-161 525.6 PPR repeat family
XP_057781408.1 Pfam PF01535 PPR Repeat 288 318 2e-101 326.1 PPR repeat
XP_057781408.1 Pfam PF12854 PPR_1 Repeat 317 349 7.2e-137 445.5 PPR repeat
XP_057781408.1 Pfam PF01535 PPR Repeat 323 353 2e-101 326.1 PPR repeat
XP_057781408.1 Pfam PF13041 PPR_2 Repeat 325 368 1.1e-161 525.6 PPR repeat family
XP_057781408.1 Pfam PF13812 PPR_3 Repeat 344 402 1.5e-79 262.8 Pentatricopeptide repeat domain
XP_057781408.1 Pfam PF12854 PPR_1 Repeat 351 383 7.2e-137 445.5 PPR repeat
XP_057781408.1 Pfam PF13041 PPR_2 Repeat 355 404 1.1e-161 525.6 PPR repeat family
XP_057781408.1 Pfam PF01535 PPR Repeat 358 385 2e-101 326.1 PPR repeat
XP_057781408.1 Pfam PF23276 TPR_24 Repeat 361 452 1.1e-40 139.3 Pentatricopeptide repeat-containing protein
XP_057781408.1 Pfam PF13041 PPR_2 Repeat 391 434 1.1e-161 525.6 PPR repeat family
XP_057781408.1 Pfam PF01535 PPR Repeat 393 423 2e-101 326.1 PPR repeat
XP_057781408.1 Pfam PF13812 PPR_3 Repeat 414 459 1.5e-79 262.8 Pentatricopeptide repeat domain
XP_057781408.1 Pfam PF12854 PPR_1 Repeat 421 453 7.2e-137 445.5 PPR repeat
XP_057781408.1 Pfam PF13041 PPR_2 Repeat 425 474 1.1e-161 525.6 PPR repeat family
XP_057781408.1 Pfam PF01535 PPR Repeat 428 455 2e-101 326.1 PPR repeat
XP_057781408.1 Pfam PF13812 PPR_3 Repeat 449 504 1.5e-79 262.8 Pentatricopeptide repeat domain
XP_057781408.1 Pfam PF12854 PPR_1 Repeat 457 486 7.2e-137 445.5 PPR repeat
XP_057781408.1 Pfam PF01535 PPR Repeat 463 486 2e-101 326.1 PPR repeat
XP_057781408.1 Pfam PF13041 PPR_2 Repeat 496 544 1.1e-161 525.6 PPR repeat family
XP_057781408.1 Pfam PF01535 PPR Repeat 498 525 2e-101 326.1 PPR repeat
XP_057781408.1 Pfam PF17177 PPR_long Repeat 512 617 1.7e-31 109.9 Pentacotripeptide-repeat region of PRORP
XP_057781408.1 Pfam PF13812 PPR_3 Repeat 518 575 1.5e-79 262.8 Pentatricopeptide repeat domain
XP_057781408.1 Pfam PF12854 PPR_1 Repeat 528 559 7.2e-137 445.5 PPR repeat
XP_057781408.1 Pfam PF01535 PPR Repeat 534 563 2e-101 326.1 PPR repeat
XP_057781408.1 Pfam PF13041 PPR_2 Repeat 536 579 1.1e-161 525.6 PPR repeat family
XP_057781408.1 Pfam PF12854 PPR_1 Repeat 561 591 7.2e-137 445.5 PPR repeat
XP_057781408.1 Pfam PF01535 PPR Repeat 568 598 2e-101 326.1 PPR repeat
XP_057781408.1 Pfam PF13812 PPR_3 Repeat 589 643 1.5e-79 262.8 Pentatricopeptide repeat domain
XP_057781408.1 Pfam PF12854 PPR_1 Repeat 596 629 7.2e-137 445.5 PPR repeat
XP_057781408.1 Pfam PF13041 PPR_2 Repeat 600 644 1.1e-161 525.6 PPR repeat family
XP_057781408.1 Pfam PF01535 PPR Repeat 603 633 2e-101 326.1 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057925425.1
TTGAAGCCCAAAGGTTATTATTGAAGCCCAAAATGCTGTAGGGAAGCCTTTAGCACATTATAACTTATAAGAAATCGGCAGTGAATCACTACAAAAAAAAATCAGCATAAAATTTGCAGTAAAATCGCAAACTCCATTCATCCCTTTCTTCAGATCCAATCTCACCGTCGATTAAGGATGATGAGCAGAAGAGCTGCTGTTTCTGCAATCGATCTCATTCATGGAAGAGGATTTCTCAATCGATCCTCGCAGAAATCGGG...

CDS

1 records

下载 CDS FASTA
LOC130999786
ATGATGAGCAGAAGAGCTGCTGTTTCTGCAATCGATCTCATTCATGGAAGAGGATTTCTCAATCGATCCTCGCAGAAATCGGGTATTCTCTCTCCTGTATTCTCTCTCTTTTCTTCCAAGGCTTTTCAACCTAAGCAGTCCGGAATCGATTTCAATTGTGTTAAAAAGCTTGACGATGCTATTGAATTGTTTCGAAAAATGAAGAGTATGCGGCGGGAGCCTTCTGTTCGAATGTACAACAATCTTTTGAGTGTTACTGC...

Protein

1 records

下载 Protein FASTA
XP_057781408.1
MMSRRAAVSAIDLIHGRGFLNRSSQKSGILSPVFSLFSSKAFQPKQSGIDFNCVKKLDDAIELFRKMKSMRREPSVRMYNNLLSVTAKIEQYSFALYMFGEMLRMGVRVNDYTMSISVNCCCRLKDIYSGFSITGFFFKIGYEPNAVTIATLINGFFLVGKEAEAVNLFEKVLDLKLCEPHAIMILHVIDGLCKAGLVIAAHDWLHRLESSGWSPDVKAYNALIDGFCKEGRMKEAGNLLESMAQQKVSPNVITFNTLID...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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