当前解析结果
SmilChr08G000180| 统一新 Gene ID | SmilChr08G000180 |
|---|---|
| 名称 | SmilChr08G000180 |
| 描述 | chitinase 5-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 1230390 - 1232129 / + |
| NCBI Gene ID | LOC130999798 |
|---|---|
| GeneID | 130999798 |
| locus_tag | - |
| NCBI Name | LOC130999798 |
| 原始查询 | LOC130999798 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | chitinase 5-like |
| 产物 | chitinase 5-like |
| Arabidopsis | AT3G54420 (EP3)homolog of carrot EP3-3 chitinase [Source:NCBI gene (formerly Entrezgene);Acc:824608] identity=45.2; qcov=1.23; evalue=7.44e-74; confidence=high |
| Rice | Os04g0494100 (Cht5)- identity=46.6; qcov=1.2; evalue=3.48e-72; confidence=high |
| GO | GO:0004568 (chitinase activity); GO:0005975 (carbohydrate metabolic process); GO:0006032 (chitin catabolic process); GO:0008061 (chitin binding); GO:0016998 (cell wall macromolecule catabolic process) |
| KEGG | smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00182 (Glyco_hydro_19); PF00187 (Chitin_bind_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999798 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057781426.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057781426.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057781426.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057781426.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057781426.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:1230567 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B118,B135,B56,B96 |
Chr8:1230569 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B132,C31,D6 |
Chr8:1230614 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B121,B32,B4,C17 |
Chr8:1230620 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C76,D3 |
Chr8:1230654 |
GC |
G |
1bp_deletion | frameshift_variant | 3 | A1,C14,C84 |
Chr8:1230654 |
GC |
G |
1bp_deletion | CDS_variant | 3 | A1,C14,C84 |
Chr8:1230665 |
G |
GC |
1bp_insertion | frameshift_variant | 3 | A1,C14,C84 |
Chr8:1230665 |
G |
GC |
1bp_insertion | CDS_variant | 3 | A1,C14,C84 |
Chr8:1230666 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B20,B37,B55,B90 |
Chr8:1230680 |
TG |
T |
1bp_deletion | frameshift_variant | 8 | B111,B112,B133,B16,B21,B46,C46,D7 |
Chr8:1230761 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr8:1230763 |
AG |
A |
1bp_deletion | frameshift_variant | 34 | A2,A7,A9,B111,B115,B125,B132,B133,B138,B14,B26,B29,B49,B52,B56,B57,B72,B73,B76,B77,C1,C17,C25,C27,C4,C41,C5,C50,C51,C54,C63,C7,C76,C77 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781426.1PF00187
Chitin_bind_1 25-56 aa
PF00182
Glyco_hydro_19 67-128 aa
PF00182
Glyco_hydro_19 173-220 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781426.1 |
Pfam | PF00187 |
Chitin_bind_1 | Domain | 25 | 56 | 1e-08 | 36.0 | Chitin recognition protein |
XP_057781426.1 |
Pfam | PF00182 |
Glyco_hydro_19 | Domain | 67 | 128 | 8.5e-22 | 78.8 | Chitinase class I |
XP_057781426.1 |
Pfam | PF00182 |
Glyco_hydro_19 | Domain | 173 | 220 | 8.5e-22 | 78.8 | Chitinase class I |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。