Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000238`

染色体: Chr08 坐标: 1626885-1637088 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000238`
名称	SmilChr08G000238
描述	putative disease resistance protein RGA3
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	1626885 - 1637088 / `-`

ID 对照

NCBI Gene ID	`LOC130999808`
GeneID	`130999808`
locus_tag	`-`
NCBI Name	`LOC130999808`
原始查询	`LOC130999808`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative disease resistance protein RGA3
产物	putative disease resistance protein RGA3
Arabidopsis	`AT3G14470` (AT3G14470) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=31.9; qcov=0.87; evalue=2.5e-109; confidence=low
Rice	`Os05g0492200` (YR1) - identity=31.8; qcov=1.04; evalue=2.59e-126; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF05729 (NACHT); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21)
InterPro	-
eggNOG	-
NR	GeneID:130999808

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057781439.1`
2	Cytosol	细胞质基质	0.40000	`XP_057781442.1`
3	Nucleus	细胞核	0.00000	`XP_057781439.1`
4	Chromosome	染色体	0.00000	`XP_057781439.1`
5	Centromere	着丝粒	0.00000	`XP_057781439.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:1628440`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A20,A5,B109
`Chr8:1628476`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr8:1628504`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr8:1628506`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr8:1628508`	`A`	`ACC`	2bp_insertion	frameshift_variant	1	C65
`Chr8:1628508`	`A`	`ACC`	2bp_insertion	CDS_variant	1	C65
`Chr8:1628526`	`T`	`TGG`	2bp_insertion	frameshift_variant	1	D10
`Chr8:1628526`	`T`	`TGG`	2bp_insertion	CDS_variant	1	D10
`Chr8:1628533`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A5,C57
`Chr8:1628570`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B117,B75,C27
`Chr8:1628603`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A14,A7,C3,C65
`Chr8:1628619`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A14,A7,C3,C65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781439.1

1126 aa

563

1126

Rx_N

NB-ARC

NACHT

WHD_DRP

LRR_14

LRR_R13L1-DRL21

PF18052 Rx_N 9-96 aa PF00931 NB-ARC 182-351 aa PF05729 NACHT 199-343 aa PF23559 WHD_DRP 432-503 aa PF23598 LRR_14 581-900 aa PF25019 LRR_R13L1-DRL21 700-835 aa

XP_057781440.1

1126 aa

563

1126

Rx_N

NB-ARC

NACHT

WHD_DRP

LRR_14

LRR_R13L1-DRL21

PF18052 Rx_N 9-96 aa PF00931 NB-ARC 182-351 aa PF05729 NACHT 199-343 aa PF23559 WHD_DRP 432-503 aa PF23598 LRR_14 581-900 aa PF25019 LRR_R13L1-DRL21 700-835 aa

XP_057781441.1

1120 aa

560

1120

Rx_N

NB-ARC

NACHT

WHD_DRP

LRR_14

LRR_R13L1-DRL21

PF18052 Rx_N 9-96 aa PF00931 NB-ARC 182-351 aa PF05729 NACHT 199-343 aa PF23559 WHD_DRP 432-503 aa PF23598 LRR_14 581-899 aa PF25019 LRR_R13L1-DRL21 700-835 aa

XP_057781442.1

1073 aa

536

1073

Rx_N

NB-ARC

NACHT

WHD_DRP

LRR_14

LRR_R13L1-DRL21

PF18052 Rx_N 6-43 aa PF00931 NB-ARC 129-298 aa PF05729 NACHT 146-290 aa PF23559 WHD_DRP 379-450 aa PF23598 LRR_14 528-847 aa PF25019 LRR_R13L1-DRL21 647-782 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781439.1`	Pfam	`PF18052`	Rx_N	Domain	9	96	2.2e-20	73.3	Rx N-terminal domain
`XP_057781439.1`	Pfam	`PF00931`	NB-ARC	Domain	182	351	4.8e-36	124.7	NB-ARC domain
`XP_057781439.1`	Pfam	`PF05729`	NACHT	Domain	199	343	8.6e-07	29.6	NACHT domain
`XP_057781439.1`	Pfam	`PF23559`	WHD_DRP	Domain	432	503	2.2e-25	89.2	Disease resistance protein Winged helix domain
`XP_057781439.1`	Pfam	`PF23598`	LRR_14	Repeat	581	900	1.6e-38	133.1	Leucine-rich repeat region
`XP_057781439.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	700	835	7.5e-43	146.2	R13L1/DRL21 LRRs
`XP_057781440.1`	Pfam	`PF18052`	Rx_N	Domain	9	96	2.2e-20	73.3	Rx N-terminal domain
`XP_057781440.1`	Pfam	`PF00931`	NB-ARC	Domain	182	351	4.8e-36	124.7	NB-ARC domain
`XP_057781440.1`	Pfam	`PF05729`	NACHT	Domain	199	343	8.6e-07	29.6	NACHT domain
`XP_057781440.1`	Pfam	`PF23559`	WHD_DRP	Domain	432	503	2.2e-25	89.2	Disease resistance protein Winged helix domain
`XP_057781440.1`	Pfam	`PF23598`	LRR_14	Repeat	581	900	1.6e-38	133.1	Leucine-rich repeat region
`XP_057781440.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	700	835	7.5e-43	146.2	R13L1/DRL21 LRRs
`XP_057781441.1`	Pfam	`PF18052`	Rx_N	Domain	9	96	2.1e-20	73.3	Rx N-terminal domain
`XP_057781441.1`	Pfam	`PF00931`	NB-ARC	Domain	182	351	4.7e-36	124.7	NB-ARC domain
`XP_057781441.1`	Pfam	`PF05729`	NACHT	Domain	199	343	8.5e-07	29.7	NACHT domain
`XP_057781441.1`	Pfam	`PF23559`	WHD_DRP	Domain	432	503	2.2e-25	89.2	Disease resistance protein Winged helix domain
`XP_057781441.1`	Pfam	`PF23598`	LRR_14	Repeat	581	899	2.8e-38	132.3	Leucine-rich repeat region
`XP_057781441.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	700	835	7.1e-43	146.3	R13L1/DRL21 LRRs
`XP_057781442.1`	Pfam	`PF18052`	Rx_N	Domain	6	43	2e-08	35.0	Rx N-terminal domain
`XP_057781442.1`	Pfam	`PF00931`	NB-ARC	Domain	129	298	4.5e-36	124.7	NB-ARC domain
`XP_057781442.1`	Pfam	`PF05729`	NACHT	Domain	146	290	8.4e-07	29.7	NACHT domain
`XP_057781442.1`	Pfam	`PF23559`	WHD_DRP	Domain	379	450	2.1e-25	89.3	Disease resistance protein Winged helix domain
`XP_057781442.1`	Pfam	`PF23598`	LRR_14	Repeat	528	847	1.4e-38	133.3	Leucine-rich repeat region
`XP_057781442.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	647	782	5.2e-43	146.7	R13L1/DRL21 LRRs

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057925458.1
CCTATAATTATTGACTTTTCGTCTCCGGAGTAGTTGAGAAATAATGAGGGGGAATTTATTTGACAAAGTCAAAGTTTGAAATATAAAAAATGAAAAAGGAAAACCATATCTTGCATAACTCATCCAATTCTGCTCCTTAATCCTCTCTCTCTCTCACTAAATTTCTCTGTTTCTCTCTCTAAGTTATCAGCTACCACAAAGCAAGGAAGCAGCAGTCCTTAAAGCGCAGTAGGGAAGTTATCAGCGCACAAAGCATGGAA...

XM_057925457.1
CTGCCCTATAATTATTGACTTTTCGTCTCCGGAGTAGTTGAGAAATAATGAGGGGGAATTTATTTGACAAAGTCAAAGTTTGAAATATAAAAAATGAAAAAGGAAAACCATATCTTGCATAACTCATCCAATTCTGCTCCTTAATCCTCTCTCTCTCTCACTAAATTTCTCTGTTTCTCTCTCTAAGTTATCAGCTACCACAAAGCAAGGAAGCAGCAGTCCTTAAAGCGCAGTAGGGAAGCGCACAAAGCATGGAAGCA...

CDS

4 records

下载 CDS FASTA

LOC130999808
ATGGAAGCAGCAGCTGCTACCGCCGTCCTTAAAGTTCTAGTCGAAAAACTCATCGACCTCTCCATGAAAGAGATCTCTCAAATCCGAGGTTTCCGCAAAAATGCAGAAAAGCTAGCTGGAAGTCTCGACATGATCCAGAAATTCTTGCACAATGCTGAGATGCGTGCCATCACCAGCGATGCTGCTGTCAAGAGCTGGTTGAAGAAGCTTGAAGACGTGGCGTTCGATGCTGACAATGTTTTGGATGAAATCAACTATCA...

Protein

4 records

下载 Protein FASTA

XP_057781439.1
MEAAAATAVLKVLVEKLIDLSMKEISQIRGFRKNAEKLAGSLDMIQKFLHNAEMRAITSDAAVKSWLKKLEDVAFDADNVLDEINYHILSKQIKATKPMKAKILSGFSSSVNSIARPRNMAVKIQEINENLESIKKEATDLGLVVRLAIANEPTLVDASLETDSYTLDPIFIGRDDAVSEIVEMLTNTITTDERAVSIISIVGMGGLGKTTLTRKVFNHLKDENQFGLHIWVHVSRNFDAITLLKTILKNLTPCQVENAS...

XP_057781440.1
MEAAAATAVLKVLVEKLIDLSMKEISQIRGFRKNAEKLAGSLDMIQKFLHNAEMRAITSDAAVKSWLKKLEDVAFDADNVLDEINYHILSKQIKATKPMKAKILSGFSSSVNSIARPRNMAVKIQEINENLESIKKEATDLGLVVRLAIANEPTLVDASLETDSYTLDPIFIGRDDAVSEIVEMLTNTITTDERAVSIISIVGMGGLGKTTLTRKVFNHLKDENQFGLHIWVHVSRNFDAITLLKTILKNLTPCQVENAS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器