当前解析结果
SmilChr08G000233| 统一新 Gene ID | SmilChr08G000233 |
|---|---|
| 名称 | SmilChr08G000233 |
| 描述 | putative disease resistance protein RGA3 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 1590925 - 1594367 / - |
| NCBI Gene ID | LOC130999820 |
|---|---|
| GeneID | 130999820 |
| locus_tag | - |
| NCBI Name | LOC130999820 |
| 原始查询 | LOC130999820 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative disease resistance protein RGA3 |
| 产物 | putative disease resistance protein RGA3 |
| Arabidopsis | AT3G14470 (AT3G14470)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=29.4; qcov=1.03; evalue=7.62e-74; confidence=low |
| Rice | Os05g0492200 (YR1)- identity=29.9; qcov=1.05; evalue=1.83e-75; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF23247 (LRR_RPS2); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999820 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.60000 | XP_057781465.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057781465.1 |
| 3 | Cell membrane | 细胞膜 | 0.40000 | XP_057781465.1 |
| 4 | Cytoplasm | 细胞质 | 0.20000 | XP_057781465.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057781465.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:1591571 |
A |
AGC |
2bp_insertion | frameshift_variant | 2 | B27,C39 |
Chr8:1591571 |
A |
AGC |
2bp_insertion | CDS_variant | 2 | B27,C39 |
Chr8:1591572 |
A |
AT |
1bp_insertion | frameshift_variant | 2 | B27,C39 |
Chr8:1591572 |
A |
AT |
1bp_insertion | CDS_variant | 2 | B27,C39 |
Chr8:1591590 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B27,C39 |
Chr8:1591619 |
TGC |
T |
2bp_deletion | frameshift_variant | 3 | B104,B30,C68 |
Chr8:1591619 |
TGC |
T |
2bp_deletion | CDS_variant | 3 | B104,B30,C68 |
Chr8:1591622 |
T |
TTC |
2bp_insertion | frameshift_variant | 3 | B104,B30,C68 |
Chr8:1591622 |
T |
TTC |
2bp_insertion | CDS_variant | 3 | B104,B30,C68 |
Chr8:1591653 |
AT |
A |
1bp_deletion | frameshift_variant | 3 | B27,B5,C39 |
Chr8:1591653 |
AT |
A |
1bp_deletion | CDS_variant | 3 | B27,B5,C39 |
Chr8:1591657 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B27,B5,C39 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781465.1PF23559
WHD_DRP 116-187 aa
PF23598
LRR_14 265-584 aa
PF25019
LRR_R13L1-DRL21 384-519 aa
PF23247
LRR_RPS2 486-602 aa
PF25019
LRR_R13L1-DRL21 713-765 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781465.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 116 | 187 | 2e-25 | 89.3 | Disease resistance protein Winged helix domain |
XP_057781465.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 265 | 584 | 9.2e-38 | 130.6 | Leucine-rich repeat region |
XP_057781465.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 384 | 519 | 8.1e-47 | 159.0 | R13L1/DRL21 LRRs |
XP_057781465.1 |
Pfam | PF23247 |
LRR_RPS2 | Repeat | 486 | 602 | 3.4e-12 | 47.3 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
XP_057781465.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 713 | 765 | 8.1e-47 | 159.0 | R13L1/DRL21 LRRs |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。