Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000265`

染色体: Chr08 坐标: 1817525-1822223 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000265`
名称	SmilChr08G000265
描述	putative disease resistance protein RGA3
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	1817525 - 1822223 / `+`

ID 对照

NCBI Gene ID	`LOC130999855`
GeneID	`130999855`
locus_tag	`-`
NCBI Name	`LOC130999855`
原始查询	`LOC130999855`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative disease resistance protein RGA3
产物	putative disease resistance protein RGA3
Arabidopsis	`AT3G14470` (AT3G14470) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=30.5; qcov=0.888; evalue=2.58e-110; confidence=low
Rice	`Os05g0492200` (YR1) - identity=30.6; qcov=1.06; evalue=3.27e-133; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21)
InterPro	-
eggNOG	-
NR	GeneID:130999855

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057781514.1`
2	Cytosol	细胞质基质	0.20000	`XP_057781514.1`
3	Nucleus	细胞核	0.00000	`XP_057781514.1`
4	Chromosome	染色体	0.00000	`XP_057781514.1`
5	Centromere	着丝粒	0.00000	`XP_057781514.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:1817715`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B110,B3,B58,C85
`Chr8:1817724`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B110,B3,B58,C85
`Chr8:1817762`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B3,B58,C85
`Chr8:1817816`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B107,B111,B134,B54,C79
`Chr8:1817817`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr8:1817834`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C32,C45,C68,C78
`Chr8:1817849`	`GCA`	`G`	2bp_deletion	frameshift_variant	14	A11,A2,B107,B11,B111,B3,B31,B54,B97,C24,C44,C71,C75,C86
`Chr8:1817853`	`C`	`CGG`	2bp_insertion	frameshift_variant	6	A11,B11,B31,B97,C24,C71
`Chr8:1817891`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A8,B16,B74,B86,C13
`Chr8:1817903`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A8,B16,B74,B86,C13
`Chr8:1817908`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A8,B16,B74,C13,C44
`Chr8:1817942`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B137

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781514.1

1131 aa

566

1131

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_R13L1-DRL21

PF18052 Rx_N 9-98 aa PF00931 NB-ARC 180-352 aa PF23559 WHD_DRP 433-504 aa PF23598 LRR_14 541-892 aa PF25019 LRR_R13L1-DRL21 668-800 aa PF25019 LRR_R13L1-DRL21 1033-1095 aa

XP_057781515.1

1131 aa

566

1131

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_R13L1-DRL21

PF18052 Rx_N 9-98 aa PF00931 NB-ARC 180-352 aa PF23559 WHD_DRP 433-504 aa PF23598 LRR_14 541-892 aa PF25019 LRR_R13L1-DRL21 668-800 aa PF25019 LRR_R13L1-DRL21 1033-1095 aa

XP_057781516.1

1130 aa

565

1130

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_R13L1-DRL21

PF18052 Rx_N 9-98 aa PF00931 NB-ARC 180-352 aa PF23559 WHD_DRP 433-504 aa PF23598 LRR_14 541-892 aa PF25019 LRR_R13L1-DRL21 668-800 aa PF25019 LRR_R13L1-DRL21 1033-1095 aa

XP_057781517.1

1130 aa

565

1130

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_R13L1-DRL21

PF18052 Rx_N 9-98 aa PF00931 NB-ARC 180-352 aa PF23559 WHD_DRP 433-504 aa PF23598 LRR_14 541-892 aa PF25019 LRR_R13L1-DRL21 668-800 aa PF25019 LRR_R13L1-DRL21 1033-1095 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781514.1`	Pfam	`PF18052`	Rx_N	Domain	9	98	8.7e-21	74.5	Rx N-terminal domain
`XP_057781514.1`	Pfam	`PF00931`	NB-ARC	Domain	180	352	3.4e-33	115.4	NB-ARC domain
`XP_057781514.1`	Pfam	`PF23559`	WHD_DRP	Domain	433	504	1.3e-25	89.9	Disease resistance protein Winged helix domain
`XP_057781514.1`	Pfam	`PF23598`	LRR_14	Repeat	541	892	2e-43	149.2	Leucine-rich repeat region
`XP_057781514.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	668	800	2.2e-50	170.5	R13L1/DRL21 LRRs
`XP_057781514.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	1033	1095	2.2e-50	170.5	R13L1/DRL21 LRRs
`XP_057781515.1`	Pfam	`PF18052`	Rx_N	Domain	9	98	8.7e-21	74.5	Rx N-terminal domain
`XP_057781515.1`	Pfam	`PF00931`	NB-ARC	Domain	180	352	3.4e-33	115.4	NB-ARC domain
`XP_057781515.1`	Pfam	`PF23559`	WHD_DRP	Domain	433	504	1.3e-25	89.9	Disease resistance protein Winged helix domain
`XP_057781515.1`	Pfam	`PF23598`	LRR_14	Repeat	541	892	2e-43	149.2	Leucine-rich repeat region
`XP_057781515.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	668	800	2.2e-50	170.5	R13L1/DRL21 LRRs
`XP_057781515.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	1033	1095	2.2e-50	170.5	R13L1/DRL21 LRRs
`XP_057781516.1`	Pfam	`PF18052`	Rx_N	Domain	9	98	8.7e-21	74.5	Rx N-terminal domain
`XP_057781516.1`	Pfam	`PF00931`	NB-ARC	Domain	180	352	3.4e-33	115.4	NB-ARC domain
`XP_057781516.1`	Pfam	`PF23559`	WHD_DRP	Domain	433	504	1.3e-25	89.9	Disease resistance protein Winged helix domain
`XP_057781516.1`	Pfam	`PF23598`	LRR_14	Repeat	541	892	2e-43	149.2	Leucine-rich repeat region
`XP_057781516.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	668	800	2.2e-50	170.5	R13L1/DRL21 LRRs
`XP_057781516.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	1033	1095	2.2e-50	170.5	R13L1/DRL21 LRRs
`XP_057781517.1`	Pfam	`PF18052`	Rx_N	Domain	9	98	8.7e-21	74.5	Rx N-terminal domain
`XP_057781517.1`	Pfam	`PF00931`	NB-ARC	Domain	180	352	3.4e-33	115.4	NB-ARC domain
`XP_057781517.1`	Pfam	`PF23559`	WHD_DRP	Domain	433	504	1.3e-25	89.9	Disease resistance protein Winged helix domain
`XP_057781517.1`	Pfam	`PF23598`	LRR_14	Repeat	541	892	2e-43	149.2	Leucine-rich repeat region
`XP_057781517.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	668	800	2.2e-50	170.5	R13L1/DRL21 LRRs
`XP_057781517.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	1033	1095	2.2e-50	170.5	R13L1/DRL21 LRRs

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057925532.1
GCTACCACTTCCCCTTGCCAAAAAAGATGACTCCATGAGATTACAATCTATTGAAAAAATGAAAAACAAAAACTAGATCTAAAAAGAAACTGTAACTCTGGTTCAGTTTGCTCCATCTCTCTCTCTCTCACAGACATAGAAGAAAGAATCTCTCTAATCAGAAACAATGGAAGGAGAAGCTGCTGCAGCCGTCCTTCAAGTTCTGGTTCAAAACCTCATCGATCATTCAAAGAAAGAGATCTCACTAATCAGAGGTCTCG...

XM_057925531.1
GCTACCACTTCCCCTTGCCAAAAAAGATGACTCCATGAGATTACAATCTATTGAAAAAATGAAAAACAAAAACTAGATCTAAAAAGAAACTGTAACTCTGGTTCAGTTTGCTCCATCTCTCTCTCTCTCACAGACATAGAAGAAAGAATCTCTCTAATCAGAAACAATGGAAGGAGAAGCTGCTGCAGCCGTCCTTCAAGTTCTGGTTCAAAACCTCATCGATCATTCAAAGAAAGAGATCTCACTAATCAGAGGTCTCG...

CDS

4 records

下载 CDS FASTA

LOC130999855
ATGGAAGGAGAAGCTGCTGCAGCCGTCCTTCAAGTTCTGGTTCAAAACCTCATCGATCATTCAAAGAAAGAGATCTCACTAATCAGAGGTCTCGACAAAGACGCAGCAAAGCTAACTGGGAGTCTCGACACCATCCAGAAATTCCTCAACGACGCTGAGCAGCGCGCCATCCCCGGCGAGGCTGTCAAGAGCTGGCTGAAGAGGCTTGAAGACGTGGCGTTTGATGCTGACAATGTTTTGGATGAACTCAACTATCGTAT...

Protein

4 records

下载 Protein FASTA

XP_057781514.1
MEGEAAAAVLQVLVQNLIDHSKKEISLIRGLDKDAAKLTGSLDTIQKFLNDAEQRAIPGEAVKSWLKRLEDVAFDADNVLDELNYRILSKEINYKATKSMKEKVLSCFSSFSHIARPRNMALRIKEIYESLDSINKEATELGLVGRLANEPTLVITALETDSYTLDPIFIGRDDVESEIVEMLTNSITTDEGSVSILAIVGMGGLGKTTLTRKVFNRLKNETRFGSHIWVHVSPSFDPIILFKKILKELTSTDGVGVEVE...

XP_057781515.1
MEGEAAAAVLQVLVQNLIDHSKKEISLIRGLDKDAAKLTGSLDTIQKFLNDAEQRAIPGEAVKSWLKRLEDVAFDADNVLDELNYRILSKEINYKATKSMKEKVLSCFSSFSHIARPRNMALRIKEIYESLDSINKEATELGLVGRLANEPTLVITALETDSYTLDPIFIGRDDVESEIVEMLTNSITTDEGSVSILAIVGMGGLGKTTLTRKVFNRLKNETRFGSHIWVHVSPSFDPIILFKKILKELTSTDGVGVEVE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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