当前解析结果
SmilChr08G000261| 统一新 Gene ID | SmilChr08G000261 |
|---|---|
| 名称 | SmilChr08G000261 |
| 描述 | putative inactive disease susceptibility protein LOV1 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 1798151 - 1802847 / + |
| NCBI Gene ID | LOC130999856 |
|---|---|
| GeneID | 130999856 |
| locus_tag | - |
| NCBI Name | LOC130999856 |
| 原始查询 | LOC130999856 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative inactive disease susceptibility protein LOV1 |
| 产物 | putative inactive disease susceptibility protein LOV1 |
| Arabidopsis | AT1G58390 (AT1G58390)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:842208] identity=34.2; qcov=0.978; evalue=3.83e-144; confidence=low |
| Rice | Os06g0158300 (KMK0024M20.32)- identity=27.4; qcov=0.957; evalue=8.85e-67; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13401 (AAA_22); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999856 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057781518.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057781518.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057781518.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781518.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781518.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:1798507 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B55,D7 |
Chr8:1798555 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B62 |
Chr8:1798615 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,B7 |
Chr8:1798747 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A22,B115,B125 |
Chr8:1798834 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A14 |
Chr8:1798969 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B105 |
Chr8:1799086 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr8:1799264 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B136,B73,C30,C36,C40 |
Chr8:1799305 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B136,C8,C85 |
Chr8:1800538 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr8:1800642 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B134,C79 |
Chr8:1800903 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A14 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057781518.1PF18052
Rx_N 6-76 aa
PF00931
NB-ARC 163-340 aa
PF13401
AAA_22 178-270 aa
PF23559
WHD_DRP 495-566 aa
PF23598
LRR_14 657-978 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781518.1 |
Pfam | PF18052 |
Rx_N | Domain | 6 | 76 | 6.5e-15 | 55.7 | Rx N-terminal domain |
XP_057781518.1 |
Pfam | PF00931 |
NB-ARC | Domain | 163 | 340 | 6.9e-41 | 140.4 | NB-ARC domain |
XP_057781518.1 |
Pfam | PF13401 |
AAA_22 | Domain | 178 | 270 | 4.9e-08 | 34.1 | AAA domain |
XP_057781518.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 495 | 566 | 5e-17 | 62.4 | Disease resistance protein Winged helix domain |
XP_057781518.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 657 | 978 | 3.5e-37 | 128.7 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。