Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000276`

染色体: Chr08 坐标: 1883239-1889538 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000276`
名称	SmilChr08G000276
描述	putative disease resistance protein RGA3
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	1883239 - 1889538 / `+`

ID 对照

NCBI Gene ID	`LOC130999864`
GeneID	`130999864`
locus_tag	`-`
NCBI Name	`LOC130999864`
原始查询	`LOC130999864`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative disease resistance protein RGA3
产物	putative disease resistance protein RGA3
Arabidopsis	`AT3G14470` (AT3G14470) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=30.8; qcov=0.972; evalue=2.29e-113; confidence=low
Rice	`Os05g0492200` (YR1) - identity=34.2; qcov=0.979; evalue=1.47e-134; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF05729 (NACHT); PF13401 (AAA_22); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21)
InterPro	-
eggNOG	-
NR	GeneID:130999864

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057781527.1`
2	Cytosol	细胞质基质	0.20000	`XP_057781527.1`
3	Nucleus	细胞核	0.00000	`XP_057781527.1`
4	Chromosome	染色体	0.00000	`XP_057781527.1`
5	Centromere	着丝粒	0.00000	`XP_057781527.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:1886499`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A10,C57,C69
`Chr8:1886534`	`C`	`T`	EMS_canonical_SNV	stop_gained	4	B24,C24,C40,C53
`Chr8:1886534`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B24,C24,C40,C53
`Chr8:1886584`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A19,C4
`Chr8:1886641`	`CG`	`C`	1bp_deletion	frameshift_variant	5	B24,B72,C24,C50,C53
`Chr8:1886641`	`CG`	`C`	1bp_deletion	CDS_variant	5	B24,B72,C24,C50,C53
`Chr8:1886704`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B122,C56,C61
`Chr8:1886707`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr8:1886708`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C17,C36
`Chr8:1886731`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A10,B125,D5
`Chr8:1886735`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A22
`Chr8:1886740`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781527.1

974 aa

487

974

Rx_N

NB-ARC

AAA_22

NACHT

WHD_DRP

LRR_14

LRR_R13L1-DRL21

PF18052 Rx_N 10-96 aa PF00931 NB-ARC 178-345 aa PF13401 AAA_22 194-281 aa PF05729 NACHT 196-341 aa PF23559 WHD_DRP 429-500 aa PF23598 LRR_14 533-830 aa PF25019 LRR_R13L1-DRL21 664-797 aa

XP_057781529.1

974 aa

487

974

Rx_N

NB-ARC

AAA_22

NACHT

WHD_DRP

LRR_14

LRR_R13L1-DRL21

XP_057781530.1

974 aa

487

974

Rx_N

NB-ARC

AAA_22

NACHT

WHD_DRP

LRR_14

LRR_R13L1-DRL21

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781527.1`	Pfam	`PF18052`	Rx_N	Domain	10	96	8.9e-20	71.3	Rx N-terminal domain
`XP_057781527.1`	Pfam	`PF00931`	NB-ARC	Domain	178	345	1.7e-35	122.8	NB-ARC domain
`XP_057781527.1`	Pfam	`PF13401`	AAA_22	Domain	194	281	1.1e-07	32.9	AAA domain
`XP_057781527.1`	Pfam	`PF05729`	NACHT	Domain	196	341	5e-07	30.4	NACHT domain
`XP_057781527.1`	Pfam	`PF23559`	WHD_DRP	Domain	429	500	8.9e-25	87.3	Disease resistance protein Winged helix domain
`XP_057781527.1`	Pfam	`PF23598`	LRR_14	Repeat	533	830	1.5e-36	126.6	Leucine-rich repeat region
`XP_057781527.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	664	797	8.5e-37	126.6	R13L1/DRL21 LRRs
`XP_057781529.1`	Pfam	`PF18052`	Rx_N	Domain	10	96	8.9e-20	71.3	Rx N-terminal domain
`XP_057781529.1`	Pfam	`PF00931`	NB-ARC	Domain	178	345	1.7e-35	122.8	NB-ARC domain
`XP_057781529.1`	Pfam	`PF13401`	AAA_22	Domain	194	281	1.1e-07	32.9	AAA domain
`XP_057781529.1`	Pfam	`PF05729`	NACHT	Domain	196	341	5e-07	30.4	NACHT domain
`XP_057781529.1`	Pfam	`PF23559`	WHD_DRP	Domain	429	500	8.9e-25	87.3	Disease resistance protein Winged helix domain
`XP_057781529.1`	Pfam	`PF23598`	LRR_14	Repeat	533	830	1.5e-36	126.6	Leucine-rich repeat region
`XP_057781529.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	664	797	8.5e-37	126.6	R13L1/DRL21 LRRs
`XP_057781530.1`	Pfam	`PF18052`	Rx_N	Domain	10	96	8.9e-20	71.3	Rx N-terminal domain
`XP_057781530.1`	Pfam	`PF00931`	NB-ARC	Domain	178	345	1.7e-35	122.8	NB-ARC domain
`XP_057781530.1`	Pfam	`PF13401`	AAA_22	Domain	194	281	1.1e-07	32.9	AAA domain
`XP_057781530.1`	Pfam	`PF05729`	NACHT	Domain	196	341	5e-07	30.4	NACHT domain
`XP_057781530.1`	Pfam	`PF23559`	WHD_DRP	Domain	429	500	8.9e-25	87.3	Disease resistance protein Winged helix domain
`XP_057781530.1`	Pfam	`PF23598`	LRR_14	Repeat	533	830	1.5e-36	126.6	Leucine-rich repeat region
`XP_057781530.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	664	797	8.5e-37	126.6	R13L1/DRL21 LRRs

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057925546.1
AGACTTAGAAGTTAGATCTAAAGATAAATTTTGTCAACTCTTGTTCAATTTGCACCAATTAATTCTCTCTCTCTCTCTCTCTCTCTCTCACACATAATCTCACACACATAGCAACTTTTGTAAAGCCTTGTTAAGTTTGCACCAATTCTCATCACTCTCTCTCACACACACACACACAGAAAAGTTAGTAAACTTCTGTTCAGTTTGCACCAATTCTCTCACTCTCTCTCTCTCACACACACACACACACTCATAGCCAA...

XM_057925544.1
AGACTTAGAAGTTAGATCTAAAGATAAATTTTGTCAACTCTTGTTCAATTTGCACCAATTAATTCTCTCTCTCTCTCTCTCTCTCTCTCACACATAATCTCACACACATAGCAACTTTTGTAAAGCCTTGTTAAGTTTGCACCAATTCTCATCACTCTCTCTCACACACACACACACAGAAAAGTTAGTAAACTTCTGTTCAGTTTGCACCAATTCTCTCACTCTCTCTCTCTCACACACACACACACACTCATAGCCAA...

CDS

3 records

下载 CDS FASTA

LOC130999864
ATGGATGCGAAAACTGCTGCCTCCGTCCTTCAAGCTCCAATTCAAAGCCTCATCGACTTTTGCAAGAAAGAGTTCTCTCAAATCCGAGGTCTCAACAAAGAAGCAGCAAAGCTAGCTGCGAGTCTCGACACCATCCAGAAATTCTTGAACGACGCGGAGGCGCGAACCATCCCTGGCGATGCCGTCAAGAGCTGGCTGAAGAAGCTTGAAGACGTGGCGTTCGACGCGGACAACGTTTTGGATGAGCTCAACTATCATCT...

Protein

3 records

下载 Protein FASTA

XP_057781527.1
MDAKTAASVLQAPIQSLIDFCKKEFSQIRGLNKEAAKLAASLDTIQKFLNDAEARTIPGDAVKSWLKKLEDVAFDADNVLDELNYHLLSKQIEHTETMMEKVLSCCSSSFNSIARTRNMALKIKEINENLESINKEATDLGLVGRLADQPALDIATLETNSYTHDPIFIGRDDVVSETVDMLTNSITTDEKSVSILAIVGMGGLGKTTLTRKVFNRLKNGTRFGSHIWVHVSSNFDALTLFKKILKELTRDQVEGESQQE...

XP_057781529.1
MDAKTAASVLQAPIQSLIDFCKKEFSQIRGLNKEAAKLAASLDTIQKFLNDAEARTIPGDAVKSWLKKLEDVAFDADNVLDELNYHLLSKQIEHTETMMEKVLSCCSSSFNSIARTRNMALKIKEINENLESINKEATDLGLVGRLADQPALDIATLETNSYTHDPIFIGRDDVVSETVDMLTNSITTDEKSVSILAIVGMGGLGKTTLTRKVFNRLKNGTRFGSHIWVHVSSNFDALTLFKKILKELTRDQVEGESQQE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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