当前解析结果
SmilChr08G000294| 统一新 Gene ID | SmilChr08G000294 |
|---|---|
| 名称 | SmilChr08G000294 |
| 描述 | putative disease resistance RPP13-like protein 3 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 2015149 - 2019541 / + |
| NCBI Gene ID | LOC130999884 |
|---|---|
| GeneID | 130999884 |
| locus_tag | - |
| NCBI Name | LOC130999884 |
| 原始查询 | LOC130999884 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative disease resistance RPP13-like protein 3 |
| 产物 | putative disease resistance RPP13-like protein 3 |
| Arabidopsis | AT3G46530 (RPP13)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=28.3; qcov=0.959; evalue=4.98e-62; confidence=low |
| Rice | Os12g0500500- identity=26.9; qcov=0.904; evalue=4.39e-54; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999884 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057781558.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057781558.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057781558.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057781558.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057781558.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:2015257 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | C75 |
Chr8:2015257 |
GA |
G |
1bp_deletion | CDS_variant | 1 | C75 |
Chr8:2015605 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A5,C16 |
Chr8:2017147 |
AC |
* |
1bp_deletion | CDS_variant | 2 | B105,C11 |
Chr8:2017186 |
C |
CCA |
2bp_insertion | frameshift_variant | 5 | B105,B136,B18,B53,C53 |
Chr8:2017186 |
C |
CCA |
2bp_insertion | CDS_variant | 5 | B105,B136,B18,B53,C53 |
Chr8:2017188 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B105,B79,C11,C16,C5 |
Chr8:2017190 |
GAA |
G |
2bp_deletion | frameshift_variant | 5 | B105,B136,B18,B53,C53 |
Chr8:2017190 |
GAA |
G |
2bp_deletion | CDS_variant | 5 | B105,B136,B18,B53,C53 |
Chr8:2017233 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A20,B60,B62,B83,C35 |
Chr8:2017277 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B120 |
Chr8:2017310 |
GA |
G |
1bp_deletion | frameshift_variant | 13 | A20,B1,B10,B105,B136,B18,B53,B62,B79,B88,C45,C48,C53 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781558.1PF00931
NB-ARC 165-316 aa
PF23559
WHD_DRP 409-492 aa
PF23598
LRR_14 541-740 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781558.1 |
Pfam | PF00931 |
NB-ARC | Domain | 165 | 316 | 1.2e-24 | 87.6 | NB-ARC domain |
XP_057781558.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 409 | 492 | 1.9e-14 | 54.2 | Disease resistance protein Winged helix domain |
XP_057781558.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 541 | 740 | 4.3e-15 | 56.1 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。