当前解析结果
SmilChr08G000297| 统一新 Gene ID | SmilChr08G000297 |
|---|---|
| 名称 | SmilChr08G000297 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 2043168 - 2049316 / + |
| NCBI Gene ID | LOC130999888 |
|---|---|
| GeneID | 130999888 |
| locus_tag | - |
| NCBI Name | LOC130999888 |
| 原始查询 | LOC130999888 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT3G46730 (AT3G46730)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823826] identity=25.8; qcov=1.01; evalue=8.62e-57; confidence=low |
| Rice | Os08g0424700 (P0456B03.103)- identity=26.1; qcov=0.721; evalue=4.93e-53; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999888 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057781561.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057781561.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057781561.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781561.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781561.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:2043320 |
C |
CTG |
2bp_insertion | frameshift_variant | 40 | A15,A19,A22,B105,B120,B124,B136,B14,B2,B27,B32,B45,B5,B50,B53,B60,B62,B65,B67,B69,B80,C11,C17,C3,C30,C4,C48,C49,C51,C55,C60,C61,C64,C66,C69,C72,C74,C82,C87,D2 |
Chr8:2043330 |
A |
AG |
1bp_insertion | frameshift_variant | 4 | A22,B5,B60,C87 |
Chr8:2043330 |
A |
AG |
1bp_insertion | CDS_variant | 4 | A22,B5,B60,C87 |
Chr8:2043335 |
T |
TC |
1bp_insertion | frameshift_variant | 5 | A22,B5,B60,C56,C87 |
Chr8:2043335 |
T |
TC |
1bp_insertion | CDS_variant | 5 | A22,B5,B60,C56,C87 |
Chr8:2043337 |
CTT |
C |
2bp_deletion | frameshift_variant | 5 | A22,B5,B60,C56,C87 |
Chr8:2043337 |
CTT |
C |
2bp_deletion | CDS_variant | 5 | A22,B5,B60,C56,C87 |
Chr8:2043342 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B123,B28,B35,C42 |
Chr8:2043344 |
ATT |
A |
2bp_deletion | frameshift_variant | 3 | B20,C28,C52 |
Chr8:2043344 |
ATT |
A |
2bp_deletion | CDS_variant | 3 | B20,C28,C52 |
Chr8:2043355 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B126 |
Chr8:2043356 |
AT |
A |
1bp_deletion | frameshift_variant | 12 | A1,A22,B20,B5,B60,B73,C28,C49,C52,C55,C56,C87 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781561.1PF18052
Rx_N 5-80 aa
PF00931
NB-ARC 149-331 aa
PF23559
WHD_DRP 434-501 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781561.1 |
Pfam | PF18052 |
Rx_N | Domain | 5 | 80 | 2.9e-08 | 34.4 | Rx N-terminal domain |
XP_057781561.1 |
Pfam | PF00931 |
NB-ARC | Domain | 149 | 331 | 8.3e-29 | 101.1 | NB-ARC domain |
XP_057781561.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 434 | 501 | 9e-14 | 52.0 | Disease resistance protein Winged helix domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。