当前解析结果
SmilChr01G001101| 统一新 Gene ID | SmilChr01G001101 |
|---|---|
| 名称 | SmilChr01G001101 |
| 描述 | uncharacterized SmilChr01G001101 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 22530442 - 22532019 / + |
| NCBI Gene ID | LOC130999897 |
|---|---|
| GeneID | 130999897 |
| locus_tag | - |
| NCBI Name | LOC130999897 |
| 原始查询 | LOC130999897 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968]; symbol=AT1G43760; hit=AT1G43760; species=arabidopsis; confidence=low |
| 产物 | DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968]; symbol=AT1G43760; hit=AT1G43760; species=arabidopsis; confidence=low |
| Arabidopsis | AT1G43760 (AT1G43760)DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968] identity=26.6; qcov=0.779; evalue=1.04e-39; confidence=low |
| Rice | Os06g0484800- identity=23.9; qcov=0.829; evalue=8.73e-37; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999897 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057781613.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057781613.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057781613.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781613.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781613.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:22530452 |
AT |
A |
1bp_deletion | frameshift_variant | 102 | A10,A13,A16,A18,A19,A2,A23,A24,A6,A7,B1,B100,B106,B108,B109,B11,B112,B115,B117,B119,B123,B125,B127,B129,B135,B136,B137,B14,B140,B18,B2,B23,B25,B26,B31,B32,B39,B40,B42,B46,B54,B56,B57,B59,B60,B61,B64,B67,B74,B77,B78,B79,B84,B85,B86,B9,B95,B96,B99,C11,C14,C15,C19,C2,C25,C26,C27,C28,C3,C30,C31,C32,C33,C35,C36,C39,C40,C43,C45,C48,C5,C51,C57,C58,C6,C61,C62,C63,C65,C68,C69,C7,C74,C75,C77,C78,C83,C84,C87,D11,D4,D7 |
Chr1:22530456 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B114,B57,B63,B83 |
Chr1:22530467 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A13,C13 |
Chr1:22530470 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B120,C17 |
Chr1:22530478 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A10,C21 |
Chr1:22530500 |
A |
AGG |
2bp_insertion | frameshift_variant | 12 | A1,B101,B24,B53,B75,B85,C18,C22,C39,C76,D4,D8 |
Chr1:22530503 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
Chr1:22530530 |
G |
A |
EMS_canonical_SNV | stop_gained | 7 | B13,B40,C10,C3,C48,C78,D5 |
Chr1:22530532 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B71,D2 |
Chr1:22530542 |
AT |
A |
1bp_deletion | frameshift_variant | 2 | D10,D11 |
Chr1:22530542 |
AT |
A |
1bp_deletion | CDS_variant | 2 | D10,D11 |
Chr1:22530554 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。