Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000313`

染色体: Chr08 坐标: 2195547-2197112 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000313`
名称	SmilChr08G000313
描述	calmodulin-like protein 3
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	2195547 - 2197112 / `-`

ID 对照

NCBI Gene ID	`LOC130999905`
GeneID	`130999905`
locus_tag	`-`
NCBI Name	`LOC130999905`
原始查询	`LOC130999905`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	calmodulin-like protein 3
产物	calmodulin-like protein 3
Arabidopsis	`AT2G43290` (MSS3) Calcium-binding EF-hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:818931] identity=54.5; qcov=0.991; evalue=2.51e-81; confidence=high
Rice	`Os12g0228800` (OsCML28) - identity=60.7; qcov=0.757; evalue=9.43e-67; confidence=high
GO	GO:0005509 (calcium ion binding)
KEGG	smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00036 (EF-hand_1); PF13202 (EF-hand_5); PF13405 (EF-hand_6); PF13499 (EF-hand_7); PF13833 (EF-hand_8)
InterPro	-
eggNOG	-
NR	GeneID:130999905

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057781581.1`
2	Nucleus	细胞核	0.00000	`XP_057781581.1`
3	Chromosome	染色体	0.00000	`XP_057781581.1`
4	Centromere	着丝粒	0.00000	`XP_057781581.1`
5	Chromatin	染色质	0.00000	`XP_057781581.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:2196119`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B34,B45,B75,C30,D9
`Chr8:2196122`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D1
`Chr8:2196131`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B130,D1
`Chr8:2196152`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C47
`Chr8:2196160`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B104,B105,B112,B44,B75
`Chr8:2196163`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr8:2196168`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C34,D6
`Chr8:2196171`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr8:2196185`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C53
`Chr8:2196218`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B18,C11,C69
`Chr8:2196228`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A2,C82
`Chr8:2196239`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B123,C54

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781581.1

222 aa

111

222

EF-hand_8

EF-hand_1

EF-hand_6

EF-hand_7

EF-hand_5

EF-hand_7

EF-hand_6

EF-hand_1

EF-hand_5

EF-hand_8

EF-hand_1

EF-hand_5

PF13833 EF-hand_8 72-101 aa PF00036 EF-hand_1 76-97 aa PF13405 EF-hand_6 76-105 aa PF13499 EF-hand_7 76-137 aa PF13202 EF-hand_5 77-98 aa PF13202 EF-hand_5 116-136 aa PF13499 EF-hand_7 147-213 aa PF13405 EF-hand_6 149-178 aa PF00036 EF-hand_1 150-176 aa PF13202 EF-hand_5 151-173 aa PF13833 EF-hand_8 165-213 aa PF00036 EF-hand_1 187-213 aa PF13202 EF-hand_5 193-212 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781581.1`	Pfam	`PF13833`	EF-hand_8	Domain	72	101	1.5e-13	51.0	EF-hand domain pair
`XP_057781581.1`	Pfam	`PF00036`	EF-hand_1	Domain	76	97	4.4e-32	107.9	EF hand domain
`XP_057781581.1`	Pfam	`PF13405`	EF-hand_6	Domain	76	105	2e-28	96.0	EF-hand domain
`XP_057781581.1`	Pfam	`PF13499`	EF-hand_7	Domain	76	137	6.7e-29	100.7	EF-hand domain pair
`XP_057781581.1`	Pfam	`PF13202`	EF-hand_5	Domain	77	98	6.6e-26	89.3	EF hand
`XP_057781581.1`	Pfam	`PF13202`	EF-hand_5	Domain	116	136	6.6e-26	89.3	EF hand
`XP_057781581.1`	Pfam	`PF13499`	EF-hand_7	Domain	147	213	6.7e-29	100.7	EF-hand domain pair
`XP_057781581.1`	Pfam	`PF13405`	EF-hand_6	Domain	149	178	2e-28	96.0	EF-hand domain
`XP_057781581.1`	Pfam	`PF00036`	EF-hand_1	Domain	150	176	4.4e-32	107.9	EF hand domain
`XP_057781581.1`	Pfam	`PF13202`	EF-hand_5	Domain	151	173	6.6e-26	89.3	EF hand
`XP_057781581.1`	Pfam	`PF13833`	EF-hand_8	Domain	165	213	1.5e-13	51.0	EF-hand domain pair
`XP_057781581.1`	Pfam	`PF00036`	EF-hand_1	Domain	187	213	4.4e-32	107.9	EF hand domain
`XP_057781581.1`	Pfam	`PF13202`	EF-hand_5	Domain	193	212	6.6e-26	89.3	EF hand

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057925598.1
TCACTTTTTTAGATCCGTTATCAACGGTCACTTCTCCCGCTCGCTTTTCACCCAAAATCTTTTTATAATTGCAAACCGACCCCACCACTCTCTACTTTTTTCCGCACACTCACACACACCAAATGCACCAATTATAACAACGCGTTTTTTCGAGTTTTAAAAATCGCCCAAATTTATTGCACAATTCAAGAATCCCAAAACGCGTTTTCCGACACAGCCAATTGCTCCAAGACAGCTCTTTTTCAACTCCTCCCACATAA...

CDS

1 records

下载 CDS FASTA

LOC130999905
ATGCCAACCAATTTGTTGAGAATTTTTCTTGTCTACAAGCTCTTCTACACACTTTTCCAATACTTAGTACCCAAGAAGCTGAGAACGTATCTCCCAGCTTCTTGGTACTCGTACACAGAACAACAACAACAACAACAGCAACAACAACATCAGCACATCAAGAACGAGCCGGTTATGTCGTTATCCGCGACGTCCCCGCGCGCTCCCCGACGAATGGACGACGGGGAGCTCCGACGGGTGTTCCAGATGTTCGACAGGAA...

Protein

1 records

下载 Protein FASTA

XP_057781581.1
MPTNLLRIFLVYKLFYTLFQYLVPKKLRTYLPASWYSYTEQQQQQQQQQHQHIKNEPVMSLSATSPRAPRRMDDGELRRVFQMFDRNGDGRITKTELNGSLENMGIFIPGDELSQMIDRVDVDGDGCVDIDEFGALYRAIMDERNEEEDMKEAFNVFDQNGDGFITVDELNSVLASLGLRQARGAEDCKKMITKVDADGDGRVDFDEFKQMMRGGSFVALGN

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器