Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000336`

染色体: Chr08 坐标: 2351183-2354370 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000336`
名称	SmilChr08G000336
描述	uncharacterized SmilChr08G000336
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	2351183 - 2354370 / `+`

ID 对照

NCBI Gene ID	`LOC130999926`
GeneID	`130999926`
locus_tag	`-`
NCBI Name	`LOC130999926`
原始查询	`LOC130999926`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	3'-5'-exoribonuclease family protein [Source:NCBI gene (formerly Entrezgene);Acc:842303]; symbol=AT1G60080; hit=AT1G60080; species=arabidopsis; confidence=high
产物	3'-5'-exoribonuclease family protein [Source:NCBI gene (formerly Entrezgene);Acc:842303]; symbol=AT1G60080; hit=AT1G60080; species=arabidopsis; confidence=high
Arabidopsis	`AT1G60080` (AT1G60080) 3'-5'-exoribonuclease family protein [Source:NCBI gene (formerly Entrezgene);Acc:842303] identity=70.3; qcov=1.01; evalue=1.12e-147; confidence=high
Rice	`Os11g0311300` - identity=62.2; qcov=0.97; evalue=1.78e-135; confidence=high
GO	GO:0000176 (nuclear exosome (RNase complex)); GO:0000177 (cytoplasmic exosome (RNase complex)); GO:0000467 (exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0034427 (GO:0034427); GO:0034473 (U1 snRNA 3'-end processing); GO:0034475 (U4 snRNA 3'-end processing); GO:0034476 (U5 snRNA 3'-end processing); GO:0043928 (GO:0043928); GO:0071028 (nuclear mRNA surveillance); GO:0071035 (nuclear polyadenylation-dependent rRNA catabolic process); GO:0071038 (TRAMP-dependent tRNA surveillance pathway); GO:0071042 (nuclear polyadenylation-dependent mRNA catabolic process)
KEGG	smil03018 (RNA degradation - Salvia miltiorrhiza (redroot sage))
Pfam	PF01138 (RNase_PH); PF03725 (RNase_PH_C)
InterPro	-
eggNOG	-
NR	GeneID:130999926

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057781610.1`
2	Nucleolus	核仁	1.00000	`XP_057781610.1`
3	Chromosome	染色体	0.00000	`XP_057781610.1`
4	Centromere	着丝粒	0.00000	`XP_057781610.1`
5	Chromatin	染色质	0.00000	`XP_057781610.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:2351965`	`GCT`	`G`	2bp_deletion	frameshift_variant	2	B24,B71
`Chr8:2351965`	`GCT`	`G`	2bp_deletion	CDS_variant	2	B24,B71
`Chr8:2352046`	`C`	`T`	EMS_canonical_SNV	stop_gained	8	B114,B137,B2,B25,B87,C41,C46,C84
`Chr8:2352049`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B127,B140,B29,B54
`Chr8:2352063`	`TA`	`T`	1bp_deletion	frameshift_variant	1	B93
`Chr8:2352063`	`TA`	`T`	1bp_deletion	CDS_variant	1	B93
`Chr8:2352336`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:2352364`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A1,B102,B114,B13,C24
`Chr8:2352367`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr8:2352389`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B127,B140,B29,B54,D11
`Chr8:2352392`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B127,B140,B29,B54,D11
`Chr8:2352536`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781610.1

303 aa

152

303

RNase_PH

RNase_PH_C

PF01138 RNase_PH 46-180 aa PF03725 RNase_PH_C 220-284 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781610.1`	Pfam	`PF01138`	RNase_PH	Domain	46	180	2.5e-24	86.9	3' exoribonuclease family, domain 1
`XP_057781610.1`	Pfam	`PF03725`	RNase_PH_C	Domain	220	284	4.3e-11	43.3	3' exoribonuclease family, domain 2

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057925627.1
TATTTCAAAAGCCAAAAAAATTAGGCCCAAACATCACTAGGAAAAAAAAAACCTACATCTTTTTTTAATTCATCACACTCGCACGAAACCTAGTACCTCAGTCCAGAGCAGCTCGGCCTCGACCACTCTTCCGGCCGCCGCTCCTCCTCACTCTTCCCGCCGCCGCCGCCGCCGCCGTTCCGCCTCAAAGCTTTCTGACGGTGTAAATCGCTTATAATCAGAACTGAGAATAAACAACAAGAACATGGCTGCTGCGAGTG...

CDS

1 records

下载 CDS FASTA

LOC130999926
ATGGCTGCTGCGAGTGGAACCAATGATTTATCTTCAGAGATGGAGCTGGATGCTTTTCGACGCCTTTTTCCTCTACGTTTTCACGAGCGACATCTTCTTGAATCTATAAGGCCCGACGGGCGTCCCCTTGGAAGGGCTAGAGAGACTACGCTTAGTCTTGGAGCTGTTGCATCTGCTAATGGATCAGCTCTAGCAAAGATAGGATGCACTACTATGTTGGCTGCCATTAAATTGGAAGTCATGACTCCAACTATAGAGGC...

Protein

1 records

下载 Protein FASTA

XP_057781610.1
MAAASGTNDLSSEMELDAFRRLFPLRFHERHLLESIRPDGRPLGRARETTLSLGAVASANGSALAKIGCTTMLAAIKLEVMTPTIEAPDEGCIAIDFHMPPICSPLIRPGRPADLAPVISKQLSDTILSSGMIDLKELCLVSGKAAWMAYLDIYCLDADGALFDAALLSAVAAFSHLQIPIVSLNDDGRIVLVSEENGRSKKEKKPVNEEKIKLKMNSQPFSLTCILHKNYILADPTSEEESIMETYLTVVLDTNHQLVS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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