当前解析结果
SmilChr08G000338| 统一新 Gene ID | SmilChr08G000338 |
|---|---|
| 名称 | SmilChr08G000338 |
| 描述 | uncharacterized SmilChr08G000338 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 2358613 - 2359358 / + |
| NCBI Gene ID | LOC130999931 |
|---|---|
| GeneID | 130999931 |
| locus_tag | - |
| NCBI Name | LOC130999931 |
| 原始查询 | LOC130999931 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pectin methylesterase inhibitor 1 [Source:NCBI gene (formerly Entrezgene);Acc:841220]; symbol=PMEI1; hit=AT1G48020; species=arabidopsis; confidence=low |
| 产物 | pectin methylesterase inhibitor 1 [Source:NCBI gene (formerly Entrezgene);Acc:841220]; symbol=PMEI1; hit=AT1G48020; species=arabidopsis; confidence=low |
| Arabidopsis | AT1G48020 (PMEI1)pectin methylesterase inhibitor 1 [Source:NCBI gene (formerly Entrezgene);Acc:841220] identity=37.4; qcov=0.545; evalue=1.95e-12; confidence=low |
| Rice | -- |
| GO | GO:0043086 (negative regulation of catalytic activity); GO:0046910 (pectinesterase inhibitor activity) |
| KEGG | - |
| Pfam | PF04043 (PMEI) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999931 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057781620.1 |
| 2 | Cell wall | 细胞壁 | 0.20000 | XP_057781620.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057781620.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781620.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781620.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:2358778 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B125,B54 |
Chr8:2358831 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr8:2358873 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B136 |
Chr8:2358912 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
Chr8:2358925 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B129,B36,C68 |
Chr8:2358954 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A14,B71,B78,C20,C58 |
Chr8:2359155 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B114,B5 |
Chr8:2359171 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B132,B90,B92 |
Chr8:2359190 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B140,B30,C8 |
Chr8:2359212 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B15,C57 |
Chr8:2359217 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057781620.1PF04043
PMEI 28-140 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781620.1 |
Pfam | PF04043 |
PMEI | Domain | 28 | 140 | 1.7e-15 | 58.2 | Plant invertase/pectin methylesterase inhibitor |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。