当前解析结果
SmilChr08G000347| 统一新 Gene ID | SmilChr08G000347 |
|---|---|
| 名称 | SmilChr08G000347 |
| 描述 | protein ENHANCED PSEUDOMONAS SUSCEPTIBILITY 1-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 2402369 - 2404641 / - |
| NCBI Gene ID | LOC130999936 |
|---|---|
| GeneID | 130999936 |
| locus_tag | - |
| NCBI Name | LOC130999936 |
| 原始查询 | LOC130999936 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein ENHANCED PSEUDOMONAS SUSCEPTIBILITY 1-like |
| 产物 | protein ENHANCED PSEUDOMONAS SUSCEPTIBILITY 1-like |
| Arabidopsis | AT5G67150 (AT5G67150)HXXXD-type acyl-transferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:836850] identity=37.9; qcov=1.03; evalue=1.93e-87; confidence=medium |
| Rice | Os08g0111300- identity=35.5; qcov=1.07; evalue=4.74e-78; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF02458 (Transferase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999936 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057781625.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057781625.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057781625.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781625.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781625.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:2403326 |
C |
CA |
1bp_insertion | frameshift_variant | 7 | A10,A8,B13,B48,B89,B9,C56 |
Chr8:2403355 |
CG |
C |
1bp_deletion | frameshift_variant | 1 | C37 |
Chr8:2403355 |
CG |
C |
1bp_deletion | CDS_variant | 1 | C37 |
Chr8:2403400 |
C |
CA |
1bp_insertion | frameshift_variant | 2 | B120,C2 |
Chr8:2403400 |
C |
CA |
1bp_insertion | CDS_variant | 2 | B120,C2 |
Chr8:2403414 |
T |
TC |
1bp_insertion | frameshift_variant | 2 | B120,C2 |
Chr8:2403414 |
T |
TC |
1bp_insertion | CDS_variant | 2 | B120,C2 |
Chr8:2403420 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D8 |
Chr8:2403431 |
AAT |
A |
2bp_deletion | frameshift_variant | 33 | A23,A6,B106,B11,B114,B122,B123,B133,B19,B2,B21,B22,B33,B5,B66,B71,B74,B86,B97,C13,C21,C41,C47,C53,C57,C58,C64,C71,C76,D10,D11,D2,D5 |
Chr8:2403436 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr8:2403444 |
C |
T |
EMS_canonical_SNV | stop_gained | 12 | A21,A5,B133,B28,B48,B66,B67,B8,B98,C16,C33,D7 |
Chr8:2403497 |
AG |
A |
1bp_deletion | frameshift_variant | 6 | A10,A8,B140,B30,B48,B76 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057781625.1PF02458
Transferase 4-427 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781625.1 |
Pfam | PF02458 |
Transferase | Family | 4 | 427 | 1.8e-74 | 251.7 | Transferase family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。