当前解析结果
SmilChr08G000356| 统一新 Gene ID | SmilChr08G000356 |
|---|---|
| 名称 | SmilChr08G000356 |
| 描述 | uncharacterized SmilChr08G000356 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 2446722 - 2454188 / + |
| NCBI Gene ID | LOC130999947 |
|---|---|
| GeneID | 130999947 |
| locus_tag | - |
| NCBI Name | LOC130999947 |
| 原始查询 | LOC130999947 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os09g0513200; species=rice; confidence=high |
| 产物 | hit=Os09g0513200; species=rice; confidence=high |
| Arabidopsis | AT3G59310 (AT3G59310)solute carrier family 35 protein (DUF914) [Source:NCBI gene (formerly Entrezgene);Acc:825100] identity=71; qcov=0.895; evalue=2.14e-134; confidence=high |
| Rice | Os09g0513200- identity=65; qcov=0.993; evalue=6.06e-137; confidence=high |
| GO | GO:0016020 (membrane); GO:0022857 (transmembrane transporter activity); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF00892 (EamA); PF06027 (SLC35F); PF08627 (CRT-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999947 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.80000 | XP_057781636.1 |
| 2 | Vacuole membrane | 液泡膜 | 0.80000 | XP_057781636.1 |
| 3 | Golgi apparatus | 高尔基体 | 0.60000 | XP_057781637.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057781636.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057781636.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:2447111 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:2450077 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B41,B93 |
Chr8:2450098 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr8:2450468 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B38,B39 |
Chr8:2450501 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr8:2451644 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B133,C37,C57 |
Chr8:2451719 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr8:2451902 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A8,C21 |
Chr8:2451920 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr8:2452116 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A23,B89 |
Chr8:2452265 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B38,B39 |
Chr8:2452734 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B70 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781636.1PF06027
SLC35F 16-303 aa
PF00892
EamA 26-150 aa
PF08627
CRT-like 56-214 aa
XP_057781637.1PF06027
SLC35F 9-298 aa
PF00892
EamA 25-145 aa
PF08627
CRT-like 51-209 aa
XP_057781638.1PF06027
SLC35F 7-236 aa
PF00892
EamA 9-83 aa
PF08627
CRT-like 13-147 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781636.1 |
Pfam | PF06027 |
SLC35F | Family | 16 | 303 | 6.7e-131 | 437.0 | Solute carrier family 35 |
XP_057781636.1 |
Pfam | PF00892 |
EamA | Domain | 26 | 150 | 8.5e-15 | 55.9 | EamA-like transporter family |
XP_057781636.1 |
Pfam | PF08627 |
CRT-like | Family | 56 | 214 | 9.3e-10 | 38.7 | CRT-like, chloroquine-resistance transporter-like |
XP_057781637.1 |
Pfam | PF06027 |
SLC35F | Family | 9 | 298 | 2e-132 | 442.0 | Solute carrier family 35 |
XP_057781637.1 |
Pfam | PF00892 |
EamA | Domain | 25 | 145 | 5.2e-15 | 56.6 | EamA-like transporter family |
XP_057781637.1 |
Pfam | PF08627 |
CRT-like | Family | 51 | 209 | 6.5e-10 | 39.2 | CRT-like, chloroquine-resistance transporter-like |
XP_057781638.1 |
Pfam | PF06027 |
SLC35F | Family | 7 | 236 | 5.4e-109 | 365.1 | Solute carrier family 35 |
XP_057781638.1 |
Pfam | PF00892 |
EamA | Domain | 9 | 83 | 7.1e-15 | 56.2 | EamA-like transporter family |
XP_057781638.1 |
Pfam | PF08627 |
CRT-like | Family | 13 | 147 | 4.1e-10 | 39.9 | CRT-like, chloroquine-resistance transporter-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。