Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000360`

染色体: Chr08 坐标: 2477364-2482582 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000360`
名称	SmilChr08G000360
描述	(-)-germacrene D synthase-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	2477364 - 2482582 / `+`

ID 对照

NCBI Gene ID	`LOC130999951`
GeneID	`130999951`
locus_tag	`-`
NCBI Name	`LOC130999951`
原始查询	`LOC130999951`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	(-)-germacrene D synthase-like
产物	(-)-germacrene D synthase-like
Arabidopsis	`AT5G23960` (TPS21) terpene synthase 21 [Source:NCBI gene (formerly Entrezgene);Acc:832461] identity=35.5; qcov=0.977; evalue=1.68e-111; confidence=medium
Rice	`Os08g0139700` (OsTPS29) - identity=37; qcov=0.971; evalue=1.41e-107; confidence=medium
GO	GO:0000287 (magnesium ion binding); GO:0010333 (terpene synthase activity); GO:0016102 (diterpenoid biosynthetic process)
KEGG	smil00909 (Sesquiterpenoid and triterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF01397 (Terpene_synth); PF03936 (Terpene_synth_C); PF19086 (Terpene_syn_C_2)
InterPro	-
eggNOG	-
NR	GeneID:130999951

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.60000	`XP_057781642.1`
2	Chloroplast	叶绿体	0.60000	`XP_057781642.1`
3	Cytoplasm	细胞质	0.40000	`XP_057781642.1`
4	Nucleus	细胞核	0.00000	`XP_057781642.1`
5	Chromosome	染色体	0.00000	`XP_057781642.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:2477452`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr8:2477458`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B103,C71
`Chr8:2477477`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr8:2477478`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A3,C64
`Chr8:2477491`	`A`	`AT`	1bp_insertion	frameshift_variant	1	A2
`Chr8:2477491`	`A`	`AT`	1bp_insertion	CDS_variant	1	A2
`Chr8:2477511`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B140,B18,C62,D11
`Chr8:2478226`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B44,B94,B97
`Chr8:2478249`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A15
`Chr8:2478260`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B44,B94,B97,C25
`Chr8:2478396`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C48
`Chr8:2478396`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781642.1

559 aa

280

559

Terpene_synth

Terpene_synth_C

Terpene_syn_C_2

PF01397 Terpene_synth 31-209 aa PF03936 Terpene_synth_C 266-503 aa PF19086 Terpene_syn_C_2 306-503 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781642.1`	Pfam	`PF01397`	Terpene_synth	Repeat	31	209	3.4e-54	184.1	Terpene synthase, N-terminal domain
`XP_057781642.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	266	503	1.4e-85	287.2	Terpene synthase family, metal binding domain
`XP_057781642.1`	Pfam	`PF19086`	Terpene_syn_C_2	Domain	306	503	1e-47	163.2	Terpene synthase family 2, C-terminal metal binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057925659.1
ACACAATTCATAGTGAAAAAAAAAATGTCTCAAATATATGCATCTGCTGCTCCCATTTCTACAAAGAAAACAAATGTAGATGATATTCGTCAATCTGTAACGTATCATCCCAGCGTTTGGAAAGATCATTTTCTTGCATACACTAACGATGTTACGGAAATCAGTGGTGATGAGAAGGAGCAACTCGAAAAGAAAAAGGAAAAGGTGAAGAAGTTGGTAGCTGAGACTCCAAATGATTCAACAGTGAAGATGGAGCTGAT...

CDS

1 records

下载 CDS FASTA

LOC130999951
ATGTCTCAAATATATGCATCTGCTGCTCCCATTTCTACAAAGAAAACAAATGTAGATGATATTCGTCAATCTGTAACGTATCATCCCAGCGTTTGGAAAGATCATTTTCTTGCATACACTAACGATGTTACGGAAATCAGTGGTGATGAGAAGGAGCAACTCGAAAAGAAAAAGGAAAAGGTGAAGAAGTTGGTAGCTGAGACTCCAAATGATTCAACAGTGAAGATGGAGCTGATCGATGCAATCCAACGGCTAGGAGT...

Protein

1 records

下载 Protein FASTA

XP_057781642.1
MSQIYASAAPISTKKTNVDDIRQSVTYHPSVWKDHFLAYTNDVTEISGDEKEQLEKKKEKVKKLVAETPNDSTVKMELIDAIQRLGVGYHFEKEIEESLRQIRQNYEIQSRKDKGDIRVLALRFRLLRQQGYCAPCDVFDEFIDEEGNWKESLLINDVEGMLSLYEASNYGINGEEILDKALEFTSSHLESLLPHEINSSMSKRVKEALDMPINKTLIRLGAKKFMSIYQEDESHNEILLNFAKLDFSILQKMHQRELHH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器