Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000382`

染色体: Chr08 坐标: 2688944-2692217 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000382`
名称	SmilChr08G000382
描述	ankyrin repeat-containing protein At5g02620-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	2688944 - 2692217 / `-`

ID 对照

NCBI Gene ID	`LOC130999974`
GeneID	`130999974`
locus_tag	`-`
NCBI Name	`LOC130999974`
原始查询	`LOC130999974`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin repeat-containing protein At5g02620-like
产物	ankyrin repeat-containing protein At5g02620-like
Arabidopsis	`AT1G07710` (AT1G07710) Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:837285] identity=69.6; qcov=0.982; evalue=0; confidence=high
Rice	`Os03g0281100` (OsSTA96) - identity=64.8; qcov=0.989; evalue=0; confidence=high
GO	GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5); PF13962 (PGG)
InterPro	-
eggNOG	-
NR	GeneID:130999974

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057781670.1`
2	Nucleus	细胞核	0.00000	`XP_057781670.1`
3	Chromosome	染色体	0.00000	`XP_057781670.1`
4	Centromere	着丝粒	0.00000	`XP_057781670.1`
5	Chromatin	染色质	0.00000	`XP_057781670.1`

进入亚细胞定位查询

EMS 诱变突变

该基因暂未检索到已上线的精选 EMS CDS / LoF 突变，或 EMS 突变库仍在构建。

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781670.1

543 aa

272

543

Ank_2

Ank

Ank_4

Ank_2

Ank

Ank_4

Ank

Ank_4

Ank_2

Ank

Ank_3

Ank_4

Ank_5

Ank

Ank_5

Ank_4

Ank_2

Ank

Ank_3

PGG

PF12796 Ank_2 15-86 aa PF00023 Ank 64-92 aa PF13637 Ank_4 68-118 aa PF12796 Ank_2 89-158 aa PF00023 Ank 98-120 aa PF13637 Ank_4 103-153 aa PF00023 Ank 134-159 aa PF13637 Ank_4 137-187 aa PF12796 Ank_2 165-225 aa PF00023 Ank 166-188 aa PF13606 Ank_3 166-191 aa PF13637 Ank_4 171-221 aa PF13857 Ank_5 186-237 aa PF00023 Ank 201-226 aa PF13857 Ank_5 220-276 aa PF13637 Ank_4 228-255 aa PF12796 Ank_2 228-292 aa PF00023 Ank 235-258 aa PF13606 Ank_3 235-258 aa PF13962 PGG 348-463 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781670.1`	Pfam	`PF12796`	Ank_2	Repeat	15	86	7.6e-51	171.4	Ankyrin repeats (3 copies)
`XP_057781670.1`	Pfam	`PF00023`	Ank	Repeat	64	92	4.1e-45	149.9	Ankyrin repeat
`XP_057781670.1`	Pfam	`PF13637`	Ank_4	Repeat	68	118	5.7e-46	154.2	Ankyrin repeats (many copies)
`XP_057781670.1`	Pfam	`PF12796`	Ank_2	Repeat	89	158	7.6e-51	171.4	Ankyrin repeats (3 copies)
`XP_057781670.1`	Pfam	`PF00023`	Ank	Repeat	98	120	4.1e-45	149.9	Ankyrin repeat
`XP_057781670.1`	Pfam	`PF13637`	Ank_4	Repeat	103	153	5.7e-46	154.2	Ankyrin repeats (many copies)
`XP_057781670.1`	Pfam	`PF00023`	Ank	Repeat	134	159	4.1e-45	149.9	Ankyrin repeat
`XP_057781670.1`	Pfam	`PF13637`	Ank_4	Repeat	137	187	5.7e-46	154.2	Ankyrin repeats (many copies)
`XP_057781670.1`	Pfam	`PF12796`	Ank_2	Repeat	165	225	7.6e-51	171.4	Ankyrin repeats (3 copies)
`XP_057781670.1`	Pfam	`PF00023`	Ank	Repeat	166	188	4.1e-45	149.9	Ankyrin repeat
`XP_057781670.1`	Pfam	`PF13606`	Ank_3	Repeat	166	191	8.9e-40	130.4	Ankyrin repeat
`XP_057781670.1`	Pfam	`PF13637`	Ank_4	Repeat	171	221	5.7e-46	154.2	Ankyrin repeats (many copies)
`XP_057781670.1`	Pfam	`PF13857`	Ank_5	Repeat	186	237	3.2e-41	139.6	Ankyrin repeats (many copies)
`XP_057781670.1`	Pfam	`PF00023`	Ank	Repeat	201	226	4.1e-45	149.9	Ankyrin repeat
`XP_057781670.1`	Pfam	`PF13857`	Ank_5	Repeat	220	276	3.2e-41	139.6	Ankyrin repeats (many copies)
`XP_057781670.1`	Pfam	`PF13637`	Ank_4	Repeat	228	255	5.7e-46	154.2	Ankyrin repeats (many copies)
`XP_057781670.1`	Pfam	`PF12796`	Ank_2	Repeat	228	292	7.6e-51	171.4	Ankyrin repeats (3 copies)
`XP_057781670.1`	Pfam	`PF00023`	Ank	Repeat	235	258	4.1e-45	149.9	Ankyrin repeat
`XP_057781670.1`	Pfam	`PF13606`	Ank_3	Repeat	235	258	8.9e-40	130.4	Ankyrin repeat
`XP_057781670.1`	Pfam	`PF13962`	PGG	Domain	348	463	5.1e-27	94.7	Domain of unknown function

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057925687.1
TCTTCATTTTCTTGTCGCAAGAGCTCTGAATCTGATTCAGAGCATCACATACAAACATATATATTTATAAATATAATTATATATATGTTTATGCAAAGTTTTTGTTGCTTACATGTGCCTTTGATGGCCCCATTCCCTTAATTAACCTCAAAGATTTCTGTTTTTATTTATTTTTTTCTTTCTTAAACAAAAGAAAAAAAAGCCCCCAAATCTTGATCTTTCCCCAACACAACTAGGGTTTGTTTTTGTTTTTGTTTTTG...

CDS

1 records

下载 CDS FASTA

LOC130999974
ATGGAGAGGCAGCCGCCGCCTCCGGCCACGCCGCGGAAGAAGATCGTGAAGCAGCTCACGGGGAAGCGGGAGGACACGGCGCTGCATTCCGCGGCTAGAGCCGGGCGGATTGAGGCCATAAGGAGCATCATTGATGGCGCCGGGGGCGAGGACGAGCTCGGGGATTTTTTAACGAAGCGCAACTCAGCTGGTGAGACGCCCTTATTCGTGGCCGCCGAGTATGGCTACATGGAGGTGGTGAGGGAGATGATCAAGCATTA...

Protein

1 records

下载 Protein FASTA

XP_057781670.1
MERQPPPPATPRKKIVKQLTGKREDTALHSAARAGRIEAIRSIIDGAGGEDELGDFLTKRNSAGETPLFVAAEYGYMEVVREMIKHYSLADAGIKAKNGFDALHIAAKQGDLEVVKVLMEAHPELSMTVDSSNTTALHTAATQGHIEIVEYFLESESNLAAIAKSNGKTALHSAARNGHVRVVDALLDKEPGITTRTDKKGQTALHMAVKGQNVEVVEKLIAADPSTINMVDTKGNTALHIAARKGRAQIVKMLLDHNET...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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