当前解析结果
SmilChr08G000386| 统一新 Gene ID | SmilChr08G000386 |
|---|---|
| 名称 | SmilChr08G000386 |
| 描述 | putative leucine-rich repeat receptor-like protein kinase At2g19210 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 2711788 - 2715829 / - |
| NCBI Gene ID | LOC130999978 |
|---|---|
| GeneID | 130999978 |
| locus_tag | - |
| NCBI Name | LOC130999978 |
| 原始查询 | LOC130999978 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative leucine-rich repeat receptor-like protein kinase At2g19210 |
| 产物 | putative leucine-rich repeat receptor-like protein kinase At2g19210 |
| Arabidopsis | AT2G19210 (AT2G19210)Leucine-rich repeat transmembrane protein kinase protein [Source:NCBI gene (formerly Entrezgene);Acc:816438] identity=33.5; qcov=1.01; evalue=2.97e-40; confidence=low |
| Rice | Os09g0355400- identity=36.1; qcov=0.866; evalue=1.2e-33; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF12819 (Malectin_like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130999978 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057781675.1 |
| 2 | Cell wall | 细胞壁 | 0.60000 | XP_057781675.1 |
| 3 | Secreted | 分泌到胞外 | 0.20000 | XP_057781675.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057781675.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057781675.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:2711976 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B106,B14 |
Chr8:2711986 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B117,B53,C65,C82 |
Chr8:2712050 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B105,C71 |
Chr8:2712076 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A1,A16,A3,B107 |
Chr8:2712090 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B129,B92 |
Chr8:2712526 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
Chr8:2712536 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B70,C44 |
Chr8:2712538 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A20,D4 |
Chr8:2712542 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C19 |
Chr8:2712549 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A4,B47 |
Chr8:2713007 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C45 |
Chr8:2713042 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B131,C22,C27,C7,C8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057781675.1PF12819
Malectin_like 7-87 aa
PF00560
LRR_1 166-187 aa
PF00560
LRR_1 189-209 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781675.1 |
Pfam | PF12819 |
Malectin_like | Domain | 7 | 87 | 4e-15 | 56.6 | Malectin-like domain |
XP_057781675.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 166 | 187 | 4.5e-08 | 32.4 | Leucine Rich Repeat |
XP_057781675.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 189 | 209 | 4.5e-08 | 32.4 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。