Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000407`

染色体: Chr08 坐标: 2853131-2859667 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000407`
名称	SmilChr08G000407
描述	kinesin-like protein KIN-5D
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	2853131 - 2859667 / `+`

ID 对照

NCBI Gene ID	`LOC130999994`
GeneID	`130999994`
locus_tag	`-`
NCBI Name	`LOC130999994`
原始查询	`LOC130999994`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	kinesin-like protein KIN-5D
产物	kinesin-like protein KIN-5D
Arabidopsis	`AT3G45850` (AT3G45850) P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:823728] identity=75.4; qcov=0.999; evalue=0; confidence=high
Rice	`Os05g0117798` (KIN5A) - identity=68.6; qcov=0.998; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0008017 (microtubule binding); GO:0008574 (plus-end-directed microtubule motor activity)
KEGG	smil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage))
Pfam	PF00225 (Kinesin); PF16796 (Microtub_bd)
InterPro	-
eggNOG	-
NR	GeneID:130999994

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoskeleton	细胞骨架	1.00000	`XP_057781687.1`
2	Spindle	Spindle	1.00000	`XP_057781687.1`
3	Spindle pole	Spindle pole	1.00000	`XP_057781687.1`
4	Centrosome	中心体	0.80000	`XP_057781687.1`
5	Midbody	Midbody	0.80000	`XP_057781687.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:2853775`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B58
`Chr8:2853903`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C82
`Chr8:2853903`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr8:2854080`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B102,B107,B89,C41
`Chr8:2854092`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C54
`Chr8:2854117`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B33,B53,B71
`Chr8:2854134`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr8:2854412`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A18,B114,C63,C67,C82
`Chr8:2854475`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B53,B71
`Chr8:2854545`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B119
`Chr8:2854806`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B128,C21,C36
`Chr8:2854898`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781687.1

1051 aa

526

1051

Microtub_bd

Kinesin

PF16796 Microtub_bd 53-203 aa PF00225 Kinesin 59-395 aa

XP_057781688.1

1051 aa

526

1051

Microtub_bd

Kinesin

PF16796 Microtub_bd 53-203 aa PF00225 Kinesin 59-395 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781687.1`	Pfam	`PF16796`	Microtub_bd	Domain	53	203	1.3e-27	97.4	Microtubule binding
`XP_057781687.1`	Pfam	`PF00225`	Kinesin	Domain	59	395	3.4e-116	388.5	Kinesin motor domain
`XP_057781688.1`	Pfam	`PF16796`	Microtub_bd	Domain	53	203	1.3e-27	97.4	Microtubule binding
`XP_057781688.1`	Pfam	`PF00225`	Kinesin	Domain	59	395	3.4e-116	388.5	Kinesin motor domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057925704.1
ACCGTAACGGCCATTTTTTTCAAGCCTCTCCTCTCTCTCTCTCTAGATTCTCTCTCTACTCTGTTTTTCTTTTCTCTTTTTTTAAATTACTCTGCTTTTATTCGAAGATAGAATAATCGACAAGTTTCAGACGGCCTCTGTTCACTATTGTCTCTATAGCATCGCCATTTGTACTCACATTCTAGCTCTGCATTACCAGATTGCCGGCCTTTCACCTCATCTGCAGGTATTGAGTGTACTAGATTCGATCAGCCGTCCTT...

XM_057925705.1
ACCGTAACGGCCATTTTTTTCAAGCCTCTCCTCTCTCTCTCTCTAGATTCTCTCTCTACTCTGTTTTTCTTTTCTCTTTTTTTAAATTACTCTGCTTTTATTCGAAGATAGAATAATCGACAAGTTTCAGACGGCCTCTGTTCACTATTGTCTCTATAGCATCGCCATTTGTACTCACATTCTAGCTCTGCATTACCAGATTGCCGGCCTTTCACCTCATCTGCAGGTATTGAGTGCAGGAGGAAGAGAGGAAGCATTTT...

CDS

2 records

下载 CDS FASTA

LOC130999994
ATGGAGAGAAGAGGCGGCGGCGGCGGCGGAGGGGGAGGAGGAGGAATGGTGCCGATATCCCCGTCGCAGACGCCGCGTTCGAGTGATAAGGCGGGGAGAGATCTGCGATCCGGTGAGGGGAGTTTCAATGCGAGGCAAGACAAGGAGAAAGGTGTTAATGTGCAGGTCATTGTTCGATGCAGGCCGTTGAGTGAGGATGAGGCGAGAATACATACGCCTGTGGTGATTTCTTGCAATGAGAACAAAAGAGAAGTCTGTGC...

Protein

2 records

下载 Protein FASTA

XP_057781687.1
MERRGGGGGGGGGGGMVPISPSQTPRSSDKAGRDLRSGEGSFNARQDKEKGVNVQVIVRCRPLSEDEARIHTPVVISCNENKREVCAVQNIANKQIDRTFLFDKVFGPSSQQKDLYEQAVCPIVFEVLEGYNCTIFAYGQTGTGKTYTMEGGSRKKNGEYPSDAGVIPRAVRQIFDILEAQHAEYSMKVTFLELYNEEISDLLAPEETSKFPEDKSKKPIALMEDGKGGVFVRGLEEEIVTTANEIYKILEKGSAKRKTA...

XP_057781688.1
MERRGGGGGGGGGGGMVPISPSQTPRSSDKAGRDLRSGEGSFNARQDKEKGVNVQVIVRCRPLSEDEARIHTPVVISCNENKREVCAVQNIANKQIDRTFLFDKVFGPSSQQKDLYEQAVCPIVFEVLEGYNCTIFAYGQTGTGKTYTMEGGSRKKNGEYPSDAGVIPRAVRQIFDILEAQHAEYSMKVTFLELYNEEISDLLAPEETSKFPEDKSKKPIALMEDGKGGVFVRGLEEEIVTTANEIYKILEKGSAKRKTA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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