Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000412`

染色体: Chr08 坐标: 2920848-2923900 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000412`
名称	SmilChr08G000412
描述	APETALA2-like protein 1
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	2920848 - 2923900 / `+`

ID 对照

NCBI Gene ID	`LOC130999999`
GeneID	`130999999`
locus_tag	`-`
NCBI Name	`LOC130999999`
原始查询	`LOC130999999`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	APETALA2-like protein 1
产物	APETALA2-like protein 1
Arabidopsis	`AT2G28550` (RAP2.7) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:817403] identity=49.5; qcov=1.06; evalue=1.01e-92; confidence=high
Rice	`Os06g0639200` (AP2/EREBP#059) - identity=59.8; qcov=0.645; evalue=1.68e-86; confidence=high
GO	GO:0003677 (DNA binding); GO:0003700 (DNA-binding transcription factor activity); GO:0006355 (regulation of DNA-templated transcription)
KEGG	-
Pfam	PF00847 (AP2)
InterPro	-
eggNOG	-
NR	GeneID:130999999

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057781693.1`
2	Chromosome	染色体	0.00000	`XP_057781693.1`
3	Centromere	着丝粒	0.00000	`XP_057781693.1`
4	Chromatin	染色质	0.00000	`XP_057781693.1`
5	Telomere	端粒	0.00000	`XP_057781693.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:2921194`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C24,D10
`Chr8:2921219`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B60
`Chr8:2921375`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr8:2921407`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr8:2922444`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B123,C27,D3
`Chr8:2922456`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B114,B53,C63,C67
`Chr8:2922495`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr8:2922562`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B58
`Chr8:2922562`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B58
`Chr8:2922953`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr8:2923021`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C57
`Chr8:2923128`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B15,B75,B83,C51,C59

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781693.1

440 aa

220

440

AP2

PF00847 AP2 110-158 aa PF00847 AP2 201-251 aa

XP_057781694.1

439 aa

220

439

AP2

PF00847 AP2 110-158 aa PF00847 AP2 201-251 aa

XP_057781695.1

425 aa

212

425

AP2

PF00847 AP2 110-158 aa

XP_057781696.1

424 aa

212

424

AP2

PF00847 AP2 110-158 aa

XP_057781697.1

405 aa

202

405

AP2

PF00847 AP2 110-158 aa PF00847 AP2 201-251 aa

XP_057781698.1

404 aa

202

404

AP2

PF00847 AP2 110-158 aa PF00847 AP2 201-251 aa

XP_057781699.1

390 aa

195

390

AP2

PF00847 AP2 110-158 aa

XP_057781700.1

389 aa

194

389

AP2

PF00847 AP2 110-158 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781693.1`	Pfam	`PF00847`	AP2	Domain	110	158	2.5e-20	73.2	AP2 domain
`XP_057781693.1`	Pfam	`PF00847`	AP2	Domain	201	251	2.5e-20	73.2	AP2 domain
`XP_057781694.1`	Pfam	`PF00847`	AP2	Domain	110	158	2.5e-20	73.3	AP2 domain
`XP_057781694.1`	Pfam	`PF00847`	AP2	Domain	201	251	2.5e-20	73.3	AP2 domain
`XP_057781695.1`	Pfam	`PF00847`	AP2	Domain	110	158	9.1e-12	45.8	AP2 domain
`XP_057781696.1`	Pfam	`PF00847`	AP2	Domain	110	158	8.9e-12	45.8	AP2 domain
`XP_057781697.1`	Pfam	`PF00847`	AP2	Domain	110	158	1.9e-20	73.6	AP2 domain
`XP_057781697.1`	Pfam	`PF00847`	AP2	Domain	201	251	1.9e-20	73.6	AP2 domain
`XP_057781698.1`	Pfam	`PF00847`	AP2	Domain	110	158	1.9e-20	73.6	AP2 domain
`XP_057781698.1`	Pfam	`PF00847`	AP2	Domain	201	251	1.9e-20	73.6	AP2 domain
`XP_057781699.1`	Pfam	`PF00847`	AP2	Domain	110	158	7.3e-12	46.1	AP2 domain
`XP_057781700.1`	Pfam	`PF00847`	AP2	Domain	110	158	7.4e-12	46.1	AP2 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XM_057925710.1
AAAATCTCTCTCTCTCTCTCTGTATATAATATGGAATAAAAAAGAGAAGAAACATTGAGCATGTATGTATATATACTCTTGAATCCTTCATTTTTTGCGGCAAATAAATATATTCTTCAATCTTGCTTCTGCTAATTACTCAATTCATCCTCTAAAGCAATTCAATTCAATTCAAATGCTCCTCCTCCTCGCACCTCATTTCTAGAGAGAGAGAGCGCTAGCTTCAACAAACCACAAACACTGCACACATCTCTATCTTC...

XM_057925711.1
AAATCTCTCTCTCTCTCTCTGTATATAATATGGAATAAAAAAGAGAAGAAACATTGAGCATGTATGTATATATACTCTTGAATCCTTCATTTTTTGCGGCAAATAAATATATTCTTCAATCTTGCTTCTGCTAATTACTCAATTCATCCTCTAAAGCAATTCAATTCAATTCAAATGCTCCTCCTCCTCGCACCTCATTTCTAGAGAGAGAGAGCGCTAGCTTCAACAAACCACAAACACTGCACACATCTCTATCTTCA...

CDS

8 records

下载 CDS FASTA

LOC130999999
ATGATGTTTGATCTCAATCTGAGCGTCGGCTGCAATGGCAGGCAGTCTCCGGCGACGTCCGTCTCGTCGGTGGTGGACGGCGCCGGAGAGACCAGCTCCAGCAACGACGACGCCTCCTCCTCCGTCGCATTGAACTTCGGCATCATCGGCGCCGATCGCGATCGCGGCGCGCTGGTGACGCGGGAGCTGTTCCCGGCGAGTCGACTCGGCGAGTTGAGTGACCCGGTGAGTCTCGGCGCCCCGACTCGGACGGTGATGCC...

Protein

8 records

下载 Protein FASTA

XP_057781693.1
MMFDLNLSVGCNGRQSPATSVSSVVDGAGETSSSNDDASSSVALNFGIIGADRDRGALVTRELFPASRLGELSDPVSLGAPTRTVMPAQQQVQQVQARKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTALAAARAYDRAAIKFRGVDADINFNLCDYEEDMKHTKNMSKEEFVHILRRQSTGFSRGSSKFRGVTLHKCGRWEARMGQFLGKKYIYLGLFDTEVEAARAYDKAAIKCNGREAVTNFDS...

XP_057781694.1
MMFDLNLSVGCNGRQSPATSVSSVVDGAGETSSSNDDASSSVALNFGIIGADRDRGALVTRELFPASRLGELSDPVSLGAPTRTVMPAQQQVQQVQARKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTALAAARAYDRAAIKFRGVDADINFNLCDYEEDMKHTKNMSKEEFVHILRRQSTGFSRGSSKFRGVTLHKCGRWEARMGQFLGKKYIYLGLFDTEVEAARAYDKAAIKCNGREAVTNFDS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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