Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000413`

染色体: Chr08 坐标: 2927913-2935156 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000413`
名称	SmilChr08G000413
描述	uncharacterized SmilChr08G000413
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	2927913 - 2935156 / `-`

ID 对照

NCBI Gene ID	`LOC131000003`
GeneID	`131000003`
locus_tag	`-`
NCBI Name	`LOC131000003`
原始查询	`LOC131000003`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RNA binding (RRM/RBD/RNP motifs) family protein [Source:NCBI gene (formerly Entrezgene);Acc:823705]; symbol=AT3G45630; hit=AT3G45630; species=arabidopsis; confidence=medium
产物	RNA binding (RRM/RBD/RNP motifs) family protein [Source:NCBI gene (formerly Entrezgene);Acc:823705]; symbol=AT3G45630; hit=AT3G45630; species=arabidopsis; confidence=medium
Arabidopsis	`AT3G45630` (AT3G45630) RNA binding (RRM/RBD/RNP motifs) family protein [Source:NCBI gene (formerly Entrezgene);Acc:823705] identity=43.2; qcov=1.06; evalue=0; confidence=medium
Rice	`Os12g0102400` (OsRINGC2-2) - identity=65.5; qcov=0.325; evalue=1.06e-142; confidence=low
GO	GO:0003723 (RNA binding); GO:0004842 (ubiquitin-protein transferase activity); GO:0016567 (protein ubiquitination); GO:0030014 (CCR4-NOT complex)
KEGG	smil03018 (RNA degradation - Salvia miltiorrhiza (redroot sage))
Pfam	PF00076 (RRM_1); PF14570 (zf-RING_4)
InterPro	-
eggNOG	-
NR	GeneID:131000003

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057781705.1`
2	Cytoplasm	细胞质	0.60000	`XP_057781705.1`
3	Cytoplasmic granule	细胞质颗粒	0.60000	`XP_057781705.1`
4	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.60000	`XP_057781705.1`
5	P-body	P-body	0.60000	`XP_057781705.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:2928778`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B114,B24,B33
`Chr8:2928879`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C28,C9
`Chr8:2929068`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B75,B87,D9
`Chr8:2929147`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B46,B53,C42,C62
`Chr8:2929148`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr8:2929310`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B110,C55,C57
`Chr8:2929311`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr8:2930136`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B104,B66,C28,D10
`Chr8:2930192`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B60
`Chr8:2930258`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C73,D6
`Chr8:2930600`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr8:2930644`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,B66,C28

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781705.1

990 aa

495

990

zf-RING_4

RRM_1

PF14570 zf-RING_4 9-61 aa PF00076 RRM_1 112-190 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781705.1`	Pfam	`PF14570`	zf-RING_4	Domain	9	61	2e-19	69.8	RING/Ubox like zinc-binding domain
`XP_057781705.1`	Pfam	`PF00076`	RRM_1	Domain	112	190	7.9e-06	26.4	RNA recognition motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009093633.1
CAAAAGCCAACCTTTCACCTTTTCTCACTGTATTCTCTCTGAATTCTCAGTCTTGTGGCTATCTTTCTCCGTCTTCATCTATATCTCCATATCTCTATCTATATCGGTATTCAATTGGTGACCTTAATTTTTTAATCTCTCGGATTCAATCATCAGCTGCCATCATGAGTGATGAAGGAGAGAAAACTTGCCCGCTCTGTGCCGAGGCAATGGATTTGACTGATCAGCAGTTGAAGCCGTGCAAGTGTGGCTATGAGATT...

XR_009093631.1
CAAAAGCCAACCTTTCACCTTTTCTCACTGTATTCTCTCTGAATTCTCAGTCTTGTGGCTATCTTTCTCCGTCTTCATCTATATCTCCATATCTCTATCTATATCGGTATTCAATTGGTGACCTTAATTTTTTAATCTCTCGGATTCAATCATCAGCTGCCATCATGAGTGATGAAGGAGAGAAAACTTGCCCGCTCTGTGCCGAGGCAATGGATTTGACTGATCAGCAGTTGAAGCCGTGCAAGTGTGGCTATGAGATT...

CDS

1 records

下载 CDS FASTA

LOC131000003
ATGAGTGATGAAGGAGAGAAAACTTGCCCGCTCTGTGCCGAGGCAATGGATTTGACTGATCAGCAGTTGAAGCCGTGCAAGTGTGGCTATGAGATTTGTGTCTGGTGCTGGCATCACATAATGGATATGGCTGAGAAAGATGAGACAGAAGGGCGTTGTCCAGCATGTCGAACTCCTTACAACAAGGAAAAAATTGTTGGAACAACTGCAAGTTGTGGAAGGCTGGTTTCAGAGATGAACGGGGAGAAAAAGTCCAAGTC...

Protein

1 records

下载 Protein FASTA

XP_057781705.1
MSDEGEKTCPLCAEAMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDETEGRCPACRTPYNKEKIVGTTASCGRLVSEMNGEKKSKSSRGKNKSSEGRKQLASVRVIQRNLVYVVGLPLNLADEDLLQSREYFGQYGKALKVSISRTASGAIQQFTNSTCSVYITYSKEEEAVRCIQSVHGFVLDGKPLRACFGTTKYCHAWLRNVPCSNPDCLYLHEVGSQEDSFTKDEIISAYTRSRVQQITGFANSTQRRSGYVLPP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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