当前解析结果
SmilChr08G000423| 统一新 Gene ID | SmilChr08G000423 |
|---|---|
| 名称 | SmilChr08G000423 |
| 描述 | putative disease resistance protein RGA3 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 3013317 - 3017662 / + |
| NCBI Gene ID | LOC131000008 |
|---|---|
| GeneID | 131000008 |
| locus_tag | - |
| NCBI Name | LOC131000008 |
| 原始查询 | LOC131000008 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative disease resistance protein RGA3 |
| 产物 | putative disease resistance protein RGA3 |
| Arabidopsis | AT3G14470 (AT3G14470)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=33.5; qcov=0.758; evalue=2.3e-119; confidence=low |
| Rice | Os05g0492200 (YR1)- identity=31.2; qcov=1.04; evalue=1.6e-136; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13401 (AAA_22); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000008 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057781717.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057781717.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057781717.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781717.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781717.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:3013458 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B38,B4,C54,C55,C83 |
Chr8:3013519 |
GCA |
G |
2bp_deletion | frameshift_variant | 4 | B12,B41,B58,C13 |
Chr8:3013519 |
GCA |
G |
2bp_deletion | CDS_variant | 4 | B12,B41,B58,C13 |
Chr8:3013530 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B105,B69,C50,C71,C75 |
Chr8:3013537 |
A |
AC |
1bp_insertion | frameshift_variant | 5 | B54,C4,C42,C68,C77 |
Chr8:3013537 |
A |
AC |
1bp_insertion | CDS_variant | 5 | B54,C4,C42,C68,C77 |
Chr8:3013538 |
T |
TC |
1bp_insertion | frameshift_variant | 9 | B25,B39,B64,B87,C3,C6,C61,C75,D9 |
Chr8:3013544 |
AT |
A |
1bp_deletion | frameshift_variant | 4 | A16,B4,B63,C55 |
Chr8:3013544 |
AT |
A |
1bp_deletion | CDS_variant | 4 | A16,B4,B63,C55 |
Chr8:3013546 |
T |
TCC |
2bp_insertion | frameshift_variant | 9 | B100,B25,B39,B64,B87,C6,C61,C75,D9 |
Chr8:3013557 |
T |
TC |
1bp_insertion | frameshift_variant | 10 | B100,B25,B39,B64,B87,C3,C6,C61,C75,D9 |
Chr8:3013578 |
CAG |
C |
2bp_deletion | frameshift_variant | 4 | B54,C42,C68,C77 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781717.1PF18052
Rx_N 9-95 aa
PF00931
NB-ARC 186-344 aa
PF13401
AAA_22 194-279 aa
PF23559
WHD_DRP 427-498 aa
PF23598
LRR_14 544-877 aa
PF25019
LRR_R13L1-DRL21 662-790 aa
PF25019
LRR_R13L1-DRL21 1130-1192 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781717.1 |
Pfam | PF18052 |
Rx_N | Domain | 9 | 95 | 1.2e-20 | 74.1 | Rx N-terminal domain |
XP_057781717.1 |
Pfam | PF00931 |
NB-ARC | Domain | 186 | 344 | 3.5e-32 | 112.1 | NB-ARC domain |
XP_057781717.1 |
Pfam | PF13401 |
AAA_22 | Domain | 194 | 279 | 1.3e-06 | 29.5 | AAA domain |
XP_057781717.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 427 | 498 | 1.9e-23 | 83.0 | Disease resistance protein Winged helix domain |
XP_057781717.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 544 | 877 | 7.5e-44 | 150.6 | Leucine-rich repeat region |
XP_057781717.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 662 | 790 | 5.2e-52 | 175.8 | R13L1/DRL21 LRRs |
XP_057781717.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 1130 | 1192 | 5.2e-52 | 175.8 | R13L1/DRL21 LRRs |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。